Gene or Protein Name EMBL Acc EPD ID Class Species Position Relative to Start Site Strand Sequence 5' to 3' Matrix Similarity Score # of DREs # of bp in promoter DRE Density cuticle protein III V00203 7018 Arthropod Drosophila melanogaster (fruit fly) -1062 (+) gacatcagcgtgtacatca 0.792 1 2706 0.19 "glue protein, salivary gland secretion protein-4^c" X07321 7019 Arthropod Drosophila melanogaster (fruit fly) -2682 (+) aaattctgcgtgcacattt 0.874 8 2859 1.43 "glue protein, salivary gland secretion protein-4^c" X07321 7019 Arthropod Drosophila melanogaster (fruit fly) -2607 (-) ataaaatgcgtgatagttg 0.848 8 2859 1.43 "glue protein, salivary gland secretion protein-4^c" X07321 7019 Arthropod Drosophila melanogaster (fruit fly) -2118 (+) aaagtgtgcgtgcgtgcgt 0.898 8 2859 1.43 "glue protein, salivary gland secretion protein-4^c" X07321 7019 Arthropod Drosophila melanogaster (fruit fly) -2114 (+) tgtgcgtgcgtgcgtgtgt 0.885 8 2859 1.43 "glue protein, salivary gland secretion protein-4^c" X07321 7019 Arthropod Drosophila melanogaster (fruit fly) -2110 (+) cgtgcgtgcgtgtgtgtgt 0.865 8 2859 1.43 "glue protein, salivary gland secretion protein-4^c" X07321 7019 Arthropod Drosophila melanogaster (fruit fly) -1377 (-) ccaggaggcgtggttagag 0.818 8 2859 1.43 "glue protein, salivary gland secretion protein-4^c" X07321 7019 Arthropod Drosophila melanogaster (fruit fly) -526 (-) aaaaattgcgtgtgctagt 0.865 8 2859 1.43 "glue protein, salivary gland secretion protein-4^c" X07321 7019 Arthropod Drosophila melanogaster (fruit fly) -22 (-) caataccgcgtgatgcgct 0.845 8 2859 1.43 74F X00359 7020 Arthropod Drosophila melanogaster (fruit fly) -362 (-) ctcctgggcgtgaatgtaa 0.807 2 450 2.28 74F X00359 7020 Arthropod Drosophila melanogaster (fruit fly) -202 (-) tcgaaccgcgtgagtctcg 0.826 2 450 2.28 yolk protein YP-I X01524 7022 Arthropod Drosophila melanogaster (fruit fly) -1167 (-) ttccggcgcgtgcattata 0.789 1 1554 0.33 yolk protein YP-II X01524 7023 Arthropod Drosophila melanogaster (fruit fly) -74 (+) ttccggcgcgtgcattata 0.789 1 1547 0.33 alcohol dehydrogenase larva Z00030 7024 Arthropod Drosophila melanogaster (fruit fly) -2909 (+) ctggcgagcgtgtacctac 0.794 4 3100 0.66 alcohol dehydrogenase larva Z00030 7024 Arthropod Drosophila melanogaster (fruit fly) -2885 (+) gacatgggcgtgcgttggt 0.857 4 3100 0.66 alcohol dehydrogenase larva Z00030 7024 Arthropod Drosophila melanogaster (fruit fly) -1403 (+) ttagggggcgtgttgtgct 0.773 4 3100 0.66 alcohol dehydrogenase larva Z00030 7024 Arthropod Drosophila melanogaster (fruit fly) -306 (+) agcgagcgcgtgcagacga 0.819 4 3100 0.66 alcohol dehydrogenase adult Z00030 7025 Arthropod Drosophila melanogaster (fruit fly) -2925 (-) attattcgcgtgcgagctg 0.870 5 3100 0.83 alcohol dehydrogenase adult Z00030 7025 Arthropod Drosophila melanogaster (fruit fly) -2611 (+) aagtcaagcgtgtaggaaa 0.775 5 3100 0.83 alcohol dehydrogenase adult Z00030 7025 Arthropod Drosophila melanogaster (fruit fly) -2202 (+) ctggcgagcgtgtacctac 0.794 5 3100 0.83 alcohol dehydrogenase adult Z00030 7025 Arthropod Drosophila melanogaster (fruit fly) -2178 (+) gacatgggcgtgcgttggt 0.857 5 3100 0.83 alcohol dehydrogenase adult Z00030 7025 Arthropod Drosophila melanogaster (fruit fly) -696 (+) ttagggggcgtgttgtgct 0.773 5 3100 0.83 Heatshock protein 70K J01103 7026 Arthropod Drosophila melanogaster (fruit fly) -102 (-) gagaatagcgtgccgttta 0.831 1 815 0.63 Heavy chain [44D] V00204 7033 Arthropod Drosophila melanogaster (fruit fly) -2594 (-) acgaatggcgtgagttttt 0.827 5 3100 0.83 Heavy chain [44D] V00204 7033 Arthropod Drosophila melanogaster (fruit fly) -1327 (+) caataatgcgtgcacggcc 0.915 5 3100 0.83 Heavy chain [44D] V00204 7033 Arthropod Drosophila melanogaster (fruit fly) -758 (-) tttaatcgcgtgacaatac 0.855 5 3100 0.83 Heavy chain [44D] V00204 7033 Arthropod Drosophila melanogaster (fruit fly) -431 (+) atgtatagcgtgtggcaat 0.796 5 3100 0.83 Heavy chain [44D] V00204 7033 Arthropod Drosophila melanogaster (fruit fly) 23 (+) atcagctgcgtgtctatta 0.810 5 3100 0.83 Light chain [44D] V00204 7034 Arthropod Drosophila melanogaster (fruit fly) -215 (+) tctctaggcgtgagctggc 0.848 1 571 0.90 fibroin X03973 7036 Arthropod Bombyx mori (silkworm) -374 (-) ccaatcggcgtgatgccac 0.833 1 651 0.79 "glue protein, salivary gland secretion protein-3" X01918 11020 Arthropod Drosophila melanogaster (fruit fly) -2958 (-) tgacccagcgtgcatcatg 0.814 1 3100 0.17 "glue protein, salivary gland secretion protein-7" X01918 11022 Arthropod Drosophila melanogaster (fruit fly) -1917 (-) tgcccgagcgtgggacctc 0.821 3 2206 0.70 "glue protein, salivary gland secretion protein-7" X01918 11022 Arthropod Drosophila melanogaster (fruit fly) -666 (-) tgttcatgcgtgatttgtg 0.863 3 2206 0.70 "glue protein, salivary gland secretion protein-7" X01918 11022 Arthropod Drosophila melanogaster (fruit fly) -608 (-) tgacccagcgtgcatcatg 0.814 3 2206 0.70 chorion protein s15 X02497 11026 Arthropod Drosophila melanogaster (fruit fly) -239 (+) aagagtcgcgtgttcgtag 0.797 1 2314 0.22 chorion protein s19 X02497 11027 Arthropod Drosophila melanogaster (fruit fly) -1622 (+) aagagtcgcgtgttcgtag 0.797 2 3100 0.33 chorion protein s19 X02497 11027 Arthropod Drosophila melanogaster (fruit fly) -323 (-) tttgggtgcgtgcgggaag 0.880 2 3100 0.33 opsin Rh1 [neither inactivation nor afterpotential E] K02315 11032 Arthropod Drosophila melanogaster (fruit fly) -762 (+) gcgcaaagcgtggcatccc 0.827 2 900 1.14 opsin Rh1 [neither inactivation nor afterpotential E] K02315 11032 Arthropod Drosophila melanogaster (fruit fly) -29 (-) ttctgccgcgtggctttta 0.747 2 900 1.14 "Carbamyl-phosphate synthetase, aspartate transcarbamylase" M37783 11034 Arthropod Drosophila melanogaster (fruit fly) -324 (+) actgtgtgcgtgtgacggt 0.896 1 1116 0.46 DOPA decarboxylase X04426 11035 Arthropod Drosophila melanogaster (fruit fly) -507 (+) attttttgcgtgatttttt 0.843 1 870 0.59 alcohol dehydrogenase-1 larva X03048 11036 Arthropod Drosophila mulleri (fruit fly) -2193 (+) attactggcgtgactgcct 0.844 6 3100 0.99 alcohol dehydrogenase-1 larva X03048 11036 Arthropod Drosophila mulleri (fruit fly) -1767 (+) gaaataggcgtgaggtagc 0.830 6 3100 0.99 alcohol dehydrogenase-1 larva X03048 11036 Arthropod Drosophila mulleri (fruit fly) -1124 (-) gtaagaggcgtgaatggct 0.827 6 3100 0.99 alcohol dehydrogenase-1 larva X03048 11036 Arthropod Drosophila mulleri (fruit fly) -519 (+) cctgagggcgtggaaaaat 0.835 6 3100 0.99 alcohol dehydrogenase-1 larva X03048 11036 Arthropod Drosophila mulleri (fruit fly) -59 (+) acatgtcgcgtgggcagcg 0.860 6 3100 0.99 alcohol dehydrogenase-1 larva X03048 11036 Arthropod Drosophila mulleri (fruit fly) -50 (+) gtgggcagcgtggccgtgt 0.789 6 3100 0.99 alcohol dehydrogenase-2 adult X03048 11037 Arthropod Drosophila mulleri (fruit fly) -1763 (-) ttcgatcgcgtgatcgtcc 0.815 3 2759 0.56 alcohol dehydrogenase-2 adult X03048 11037 Arthropod Drosophila mulleri (fruit fly) -1670 (+) ggcccaggcgtgtcattgc 0.808 3 2759 0.56 alcohol dehydrogenase-2 adult X03048 11037 Arthropod Drosophila mulleri (fruit fly) -297 (-) tgtcttcgcgtgtttgcgt 0.795 3 2759 0.56 antennapedia M95824 11039 Arthropod Drosophila melanogaster (fruit fly) 76 (-) actaaacgcgtgaaacgac 0.853 1 718 0.71 fushi tarazu X00854 11040 Arthropod Drosophila melanogaster (fruit fly) -598 (-) gagggtcgcgtgtttgcgc 0.810 4 1001 2.05 fushi tarazu X00854 11040 Arthropod Drosophila melanogaster (fruit fly) -583 (-) ggaatacgcgtggccgagg 0.811 4 1001 2.05 fushi tarazu X00854 11040 Arthropod Drosophila melanogaster (fruit fly) -17 (+) acggcgagcgtgtgccgag 0.837 4 1001 2.05 fushi tarazu X00854 11040 Arthropod Drosophila melanogaster (fruit fly) 64 (+) cagcgttgcgtgcacatcg 0.927 4 1001 2.05 Metallothionein M27708 11042 Arthropod Drosophila melanogaster (fruit fly) -96 (+) ccggccggcgtgtgcaaaa 0.839 1 474 1.08 "mRNA A,C [99D/serendipity]" X03121 11047 Arthropod Drosophila melanogaster (fruit fly) -1866 (-) cttgccggcgtgccactgg 0.856 3 2088 0.74 "mRNA A,C [99D/serendipity]" X03121 11047 Arthropod Drosophila melanogaster (fruit fly) -1523 (-) atcgactgcgtgctgtcgg 0.841 3 2088 0.74 "mRNA A,C [99D/serendipity]" X03121 11047 Arthropod Drosophila melanogaster (fruit fly) -1405 (-) aacggacgcgtggagctca 0.762 3 2088 0.74 mRNA D [99D/serendipity] X03121 11048 Arthropod Drosophila melanogaster (fruit fly) -1639 (-) ggccagggcgtggcgaacg 0.808 5 3100 0.83 mRNA D [99D/serendipity] X03121 11048 Arthropod Drosophila melanogaster (fruit fly) -1219 (+) cctggatgcgtgcattgtg 0.898 5 3100 0.83 mRNA D [99D/serendipity] X03121 11048 Arthropod Drosophila melanogaster (fruit fly) -1168 (-) gacctccgcgtggtgtgcg 0.801 5 3100 0.83 mRNA D [99D/serendipity] X03121 11048 Arthropod Drosophila melanogaster (fruit fly) -101 (-) ccaccaggcgtggcgaacg 0.829 5 3100 0.83 mRNA D [99D/serendipity] X03121 11048 Arthropod Drosophila melanogaster (fruit fly) -67 (-) ctaaaatgcgtgaaatgca 0.899 5 3100 0.83 Larval serum protein 1 beta U63556 11050 Arthropod Drosophila melanogaster (fruit fly) -687 (-) gcctgctgcgtgtgtgaca 0.858 3 844 1.82 Larval serum protein 1 beta U63556 11050 Arthropod Drosophila melanogaster (fruit fly) -655 (+) ttcctaggcgtgtgatcct 0.805 3 844 1.82 Larval serum protein 1 beta U63556 11050 Arthropod Drosophila melanogaster (fruit fly) -569 (-) tgaggcagcgtgaaatcca 0.833 3 844 1.82 Virus like particle RNA [copia] X02600 11053 Arthropod Drosophila melanogaster (fruit fly) -995 (-) aatctgggcgtgtacaaag 0.799 2 3087 0.33 Virus like particle RNA [copia] X02600 11053 Arthropod Drosophila melanogaster (fruit fly) -144 (+) tgagggggcgtgttggaat 0.773 2 3087 0.33 alcohol dehydrogenase adult X04672 14017 Arthropod Drosophila sechellia (fruit fly) -672 (+) ttagggggcgtgttgtgct 0.773 1 1407 0.36 alcohol dehydrogenase adult X00607 14018 Arthropod Drosophila simulans (fruit fly) -690 (+) ttagggggcgtgttgtgct 0.773 1 1425 0.36 alcohol dehydrogenase adult Z00032 14020 Arthropod Drosophila orena (fruit fly) -619 (-) tgggggggcgtgtctgctg 0.790 1 3096 0.17 alcohol dehydrogenase larva X04672 14021 Arthropod Drosophila sechellia (fruit fly) -1378 (+) ttagggggcgtgttgtgct 0.773 3 2113 0.73 alcohol dehydrogenase larva X04672 14021 Arthropod Drosophila sechellia (fruit fly) -305 (+) agcgagcgcgtgcagacga 0.819 3 2113 0.73 alcohol dehydrogenase larva X04672 14021 Arthropod Drosophila sechellia (fruit fly) -143 (+) ctaggcagcgtgccgtcgc 0.833 3 2113 0.73 alcohol dehydrogenase larva X00607 14022 Arthropod Drosophila simulans (fruit fly) -1399 (+) ttagggggcgtgttgtgct 0.773 2 2134 0.48 alcohol dehydrogenase larva X00607 14022 Arthropod Drosophila simulans (fruit fly) -306 (+) agcgagcgcgtgcagacga 0.819 2 2134 0.48 alcohol dehydrogenase larva Z00033 14023 Arthropod Drosophila mauritiana (fruit fly) -312 (+) agcgagcgcgtgcagacga 0.819 2 965 1.06 alcohol dehydrogenase larva Z00033 14023 Arthropod Drosophila mauritiana (fruit fly) -182 (+) acaaaccgcgtgtgcggaa 0.818 2 965 1.06 alcohol dehydrogenase larva Z00032 14024 Arthropod Drosophila orena (fruit fly) -1291 (-) tgggggggcgtgtctgctg 0.790 2 1419 0.72 alcohol dehydrogenase larva Z00032 14024 Arthropod Drosophila orena (fruit fly) -312 (+) agcgcgcgcgtgcagacga 0.830 2 1419 0.72 chorion protein s38 X05245 15009 Arthropod Drosophila melanogaster (fruit fly) -2180 (-) tcctccggcgtgggctgga 0.811 3 3100 0.50 chorion protein s38 X05245 15009 Arthropod Drosophila melanogaster (fruit fly) -164 (+) cagcgatgcgtgcgatcta 0.920 3 3100 0.50 chorion protein s38 X05245 15009 Arthropod Drosophila melanogaster (fruit fly) -123 (+) tcgcatcgcgtgggcccgg 0.829 3 3100 0.50 yolk protein YP-III X04754 15010 Arthropod Drosophila melanogaster (fruit fly) -1735 (+) agagcctgcgtgccataca 0.908 2 1924 0.53 yolk protein YP-III X04754 15010 Arthropod Drosophila melanogaster (fruit fly) -1076 (+) agaatgtgcgtggtgccca 0.823 2 1924 0.53 alpha-amylase X04569 15012 Arthropod Drosophila melanogaster (fruit fly) -1255 (-) gacgcctgcgtgataagcg 0.934 3 1633 0.94 alpha-amylase X04569 15012 Arthropod Drosophila melanogaster (fruit fly) -325 (+) cctaggagcgtgaacgtaa 0.833 3 1633 0.94 alpha-amylase X04569 15012 Arthropod Drosophila melanogaster (fruit fly) -130 (+) accccatgcgtgaaaaaac 0.907 3 1633 0.94 Deformed X05136 15014 Arthropod Drosophila melanogaster (fruit fly) -153 (+) tttgtgcgcgtgtgtgggc 0.802 1 361 1.42 ultrabithorax X05177 15015 Arthropod Drosophila funebris (fruit fly) -655 (+) ctgcagcgcgtgccgtgca 0.850 2 1326 0.77 ultrabithorax X05177 15015 Arthropod Drosophila funebris (fruit fly) -544 (-) caggcgagcgtgcatacgc 0.859 2 1326 0.77 hunchbank U17742 15017 Arthropod Drosophila melanogaster (fruit fly) -2895 (-) gcacagtgcgtgcgagggg 0.946 6 3100 0.99 hunchbank U17742 15017 Arthropod Drosophila melanogaster (fruit fly) -2885 (+) gcactgtgcgtgttggtct 0.839 6 3100 0.99 hunchbank U17742 15017 Arthropod Drosophila melanogaster (fruit fly) -1943 (-) gaggggggcgtggccaggg 0.839 6 3100 0.99 hunchbank U17742 15017 Arthropod Drosophila melanogaster (fruit fly) -1070 (-) gttagtggcgtggtgtggc 0.791 6 3100 0.99 hunchbank U17742 15017 Arthropod Drosophila melanogaster (fruit fly) -326 (-) gcagctagcgtgggcagtt 0.867 6 3100 0.99 hunchbank U17742 15017 Arthropod Drosophila melanogaster (fruit fly) -58 (+) ccttgacgcgtgcatccgt 0.841 6 3100 0.99 zeste X06743 15019 Arthropod Drosophila melanogaster (fruit fly) 27 (+) aatgtgtgcgtgtaagcga 0.857 1 678 0.76 yellow X04427 15022 Arthropod Drosophila melanogaster (fruit fly) -215 (+) taaacatgcgtgaaaatca 0.890 1 970 0.53 beta 39K protein L22858 15023 Arthropod Autographa californica nuclear polyhedrosis virus -191 (-) cctaagtgcgtgcaatttt 0.897 2 901 1.14 beta 39K protein L22858 15023 Arthropod Autographa californica nuclear polyhedrosis virus -116 (-) tgcttgagcgtgttgatgg 0.765 2 901 1.14 globin VIIB-4 U07703 16022 Arthropod Chironomus thummi (midge) -2418 (-) tcttgtggcgtgtgtggcg 0.836 2 3100 0.33 globin VIIB-4 U07703 16022 Arthropod Chironomus thummi (midge) -965 (+) tcttgtggcgtgtgtggcg 0.836 2 3100 0.33 Transcript-4 [achaete-scute complex] M17119 16023 Arthropod Drosophila melanogaster (fruit fly) -402 (+) aatagaagcgtgcgtgagc 0.827 3 644 2.39 Transcript-4 [achaete-scute complex] M17119 16023 Arthropod Drosophila melanogaster (fruit fly) -398 (+) gaagcgtgcgtgagctgca 0.925 3 644 2.39 Transcript-4 [achaete-scute complex] M17119 16023 Arthropod Drosophila melanogaster (fruit fly) -328 (+) attcctggcgtgccgtagc 0.832 3 644 2.39 Transcript-5 [achaete-scute complex] M17120 16024 Arthropod Drosophila melanogaster (fruit fly) -303 (-) ccctgtcgcgtgccggctg 0.877 2 971 1.05 Transcript-5 [achaete-scute complex] M17120 16024 Arthropod Drosophila melanogaster (fruit fly) -65 (-) cccacctgcgtgactacct 0.925 2 971 1.05 alpha 35K [+.87] L22858 16026 Arthropod Autographa californica nuclear polyhedrosis virus -1472 (-) cgtgttggcgtgcacgtat 0.861 2 2767 0.37 alpha 35K [+.87] L22858 16026 Arthropod Autographa californica nuclear polyhedrosis virus -58 (-) acgacgcgcgtgtaatttt 0.797 2 2767 0.37 alpha 94K [-.87] L22858 16027 Arthropod Autographa californica nuclear polyhedrosis virus -661 (-) gcggtatgcgtgttgaagc 0.844 4 1298 1.58 alpha 94K [-.87] L22858 16027 Arthropod Autographa californica nuclear polyhedrosis virus -529 (-) aatggcagcgtgttgaaaa 0.772 4 1298 1.58 alpha 94K [-.87] L22858 16027 Arthropod Autographa californica nuclear polyhedrosis virus -311 (+) gtcaattgcgtgttcataa 0.837 4 1298 1.58 alpha 94K [-.87] L22858 16027 Arthropod Autographa californica nuclear polyhedrosis virus -119 (+) acgacgcgcgtgtaatttt 0.797 4 1298 1.58 U1 small nuclear RNA X02136 17014 Arthropod Drosophila melanogaster (fruit fly) -86 (-) tgaaagtgcgtgaaagtct 0.883 1 507 1.01 ultrabithorax L48177 17017 Arthropod Drosophila melanogaster (fruit fly) -2619 (-) tccgtatgcgtgcgatggg 0.927 4 3100 0.66 ultrabithorax L48177 17017 Arthropod Drosophila melanogaster (fruit fly) -2115 (+) tcgggctgcgtgggcgtgg 0.852 4 3100 0.66 ultrabithorax L48177 17017 Arthropod Drosophila melanogaster (fruit fly) -2109 (+) tgcgtgggcgtggtggtgg 0.759 4 3100 0.66 ultrabithorax L48177 17017 Arthropod Drosophila melanogaster (fruit fly) -323 (+) tcgtttggcgtgcaactgg 0.856 4 3100 0.66 Retrotransposon 412 X04132 17018 Arthropod Drosophila melanogaster (fruit fly) -177 (-) ttggtcggcgtgtgaatgn 0.795 2 277 3.70 Retrotransposon 412 X04132 17018 Arthropod Drosophila melanogaster (fruit fly) -68 (-) cgtagctgcgtgccgggta 0.905 2 277 3.70 alcohol dehydrogenase-1 larva X12536 23018 Arthropod Drosophila mojavensis (fruit fly) -2900 (+) ggaataggcgtgtggtaac 0.794 8 3100 1.32 alcohol dehydrogenase-1 larva X12536 23018 Arthropod Drosophila mojavensis (fruit fly) -1866 (+) atagggggcgtgccataga 0.831 8 3100 1.32 alcohol dehydrogenase-1 larva X12536 23018 Arthropod Drosophila mojavensis (fruit fly) -1751 (+) tttagaggcgtggcatttt 0.773 8 3100 1.32 alcohol dehydrogenase-1 larva X12536 23018 Arthropod Drosophila mojavensis (fruit fly) -1587 (+) ttagtttgcgtgaaatact 0.902 8 3100 1.32 alcohol dehydrogenase-1 larva X12536 23018 Arthropod Drosophila mojavensis (fruit fly) -1384 (-) gaaaggggcgtggtatcca 0.803 8 3100 1.32 alcohol dehydrogenase-1 larva X12536 23018 Arthropod Drosophila mojavensis (fruit fly) -532 (+) gcagagcgcgtgctgtacg 0.829 8 3100 1.32 alcohol dehydrogenase-1 larva X12536 23018 Arthropod Drosophila mojavensis (fruit fly) -517 (+) tacgtacgcgtggatgcat 0.786 8 3100 1.32 alcohol dehydrogenase-1 larva X12536 23018 Arthropod Drosophila mojavensis (fruit fly) -56 (+) atgtgctgcgtgggcagtg 0.861 8 3100 1.32 alcohol dehydrogenase-2 adult X12536 23019 Arthropod Drosophila mojavensis (fruit fly) -2218 (+) accggcagcgtgacagtac 0.848 1 3100 0.17 actin cytoplasmic [5C] X06383 23021 Arthropod Drosophila melanogaster (fruit fly) -275 (-) attttgcgcgtgagtgtgt 0.811 2 416 2.46 actin cytoplasmic [5C] X06383 23021 Arthropod Drosophila melanogaster (fruit fly) 71 (-) attcaaggcgtgaaaacta 0.813 2 416 2.46 actin muscle [87E] X12452 23022 Arthropod Drosophila melanogaster (fruit fly) -79 (+) tgagtgtgcgtgcggaaaa 0.895 1 445 1.15 elongation factor 1-alpha F2 X06870 23025 Arthropod Drosophila melanogaster (fruit fly) 22 (-) gagctctgcgtgcacttac 0.881 1 424 1.21 cuticle protein [Gart] X06286 23027 Arthropod Drosophila melanogaster (fruit fly) -2829 (-) aaagtgtgcgtgccatgct 0.934 3 3100 0.50 cuticle protein [Gart] X06286 23027 Arthropod Drosophila melanogaster (fruit fly) -2757 (+) accaccagcgtggcgccag 0.801 3 3100 0.50 cuticle protein [Gart] X06286 23027 Arthropod Drosophila melanogaster (fruit fly) -2672 (-) ggaaagggcgtggtggtgg 0.764 3 3100 0.50 cuticle protein [Gart] X06285 23028 Arthropod Drosophila pseudoobscura (fruit fly) -2027 (+) tgagccagcgtgtggatca 0.794 1 3100 0.17 labial X13104 23029 Arthropod Drosophila melanogaster (fruit fly) -62 (+) cagaggggcgtggccaaga 0.822 1 492 1.04 glyceraldehyde-3-phosphate dehydrogenase 2 M11255 23032 Arthropod Drosophila melanogaster (fruit fly) -579 (+) gaattctgcgtgactcaaa 0.887 1 680 0.75 Cellular protooncogen homologue of rat-derived Kirsten murine sarcoma virus U15967 23033 Arthropod Drosophila melanogaster (fruit fly) 10 (-) agcagcagcgtgaccgttc 0.815 1 261 1.96 white X02974 23036 Arthropod Drosophila melanogaster (fruit fly) -2592 (-) ttcaaaagcgtgttcctct 0.747 3 3100 0.50 white X02974 23036 Arthropod Drosophila melanogaster (fruit fly) -2046 (+) agggggggcgtggccctta 0.777 3 3100 0.50 white X02974 23036 Arthropod Drosophila melanogaster (fruit fly) -1992 (+) ctgattagcgtgcagctag 0.838 3 3100 0.50 engrailed M29285 24009 Arthropod Drosophila melanogaster (fruit fly) -1805 (+) ttgtcatgcgtgagagagc 0.897 2 2507 0.41 engrailed M29285 24009 Arthropod Drosophila melanogaster (fruit fly) 29 (+) cagacgtgcgtgtcggaac 0.876 2 2507 0.41 tropomyosin I K03276 25020 Arthropod Drosophila melanogaster (fruit fly) -363 (-) tgtgtgtgcgtgtatccgt 0.832 4 1274 1.61 tropomyosin I K03276 25020 Arthropod Drosophila melanogaster (fruit fly) -59 (+) gcagtgtgcgtgtgcgtgg 0.869 4 1274 1.61 tropomyosin I K03276 25020 Arthropod Drosophila melanogaster (fruit fly) -53 (+) tgcgtgtgcgtgggatctt 0.869 4 1274 1.61 tropomyosin I K03276 25020 Arthropod Drosophila melanogaster (fruit fly) 49 (-) aatcctggcgtgaccaacc 0.873 4 1274 1.61 "chorion protein, high-cysteine-chorion B 12" K02835 25080 Arthropod Bombyx mori (silkworm) -978 (-) tgtggccgcgtgcccatct 0.845 2 1498 0.68 "chorion protein, high-cysteine-chorion B 12" K02835 25080 Arthropod Bombyx mori (silkworm) -665 (-) attaaaagcgtgatgggta 0.785 2 1498 0.68 vitellogenin B M17334 26003 Arthropod Locusta migratoria (migratory locust) -163 (+) cattatcgcgtgtacggcg 0.848 2 618 1.66 vitellogenin B M17334 26003 Arthropod Locusta migratoria (migratory locust) -75 (+) tcgccatgcgtgaccccgg 0.899 2 618 1.66 chaoptin M19008 26037 Arthropod Drosophila melanogaster (fruit fly) -3 (+) cagacgtgcgtggaacgcg 0.907 2 314 3.26 chaoptin M19008 26037 Arthropod Drosophila melanogaster (fruit fly) 82 (-) gacactcgcgtggaaatcc 0.844 2 314 3.26 beta R1 [PstI-G] L22858 30034 Arthropod Autographa californica nuclear polyhedrosis virus -312 (-) tgtcttcgcgtgtttgcgt 0.795 1 377 1.36 globin VIIB5 U07703 37002 Arthropod Chironomus thummi (midge) -1889 (-) tcttgtggcgtgtgtggcg 0.836 2 3100 0.33 globin VIIB-5 U07703 37002 Arthropod Chironomus thummi (midge) -1070 (+) tctgtgggcgtgtcgttat 0.783 2 3100 0.33 globin VIIB-6 U07703 37003 Arthropod Chironomus thummi (midge) -2372 (-) tcttgtggcgtgtgtggcg 0.836 1 3100 0.17 globin VIIB-7 U07703 37004 Arthropod Chironomus thummi (midge) -744 (-) tcttgtggcgtgtgtagcg 0.843 1 3100 0.17 Phe-Met-Arg-Phe-NH(2) neuropeptide U38796 46003 Arthropod Drosophila melanogaster (fruit fly) -819 (+) cagtcatgcgtggtggaca 0.846 1 1242 0.41 cAMP phosphodiesterase [dunce] X55164 47006 Arthropod Drosophila melanogaster (fruit fly) 71 (+) tgtgtgtgcgtgtgggtgc 0.837 2 224 4.57 cAMP phosphodiesterase [dunce] X55164 47006 Arthropod Drosophila melanogaster (fruit fly) 81 (+) tgtgggtgcgtgtgtgtgc 0.835 2 224 4.57 Histone H1 early V01143 7039 Echinoderm Psammechinus miliaris (sand urchin) -2940 (-) actcacggcgtgcttggcc 0.827 3 2203 0.70 Histone H1 early V01143 7039 Echinoderm Psammechinus miliaris (sand urchin) -1930 (-) cctcttggcgtggatggcg 0.844 3 2203 0.70 Histone H1 early V01143 7039 Echinoderm Psammechinus miliaris (sand urchin) -108 (-) ccgatcagcgtgtgtttgc 0.801 3 2203 0.70 Histone H2A early V01143 7040 Echinoderm Psammechinus miliaris (sand urchin) -1694 (-) actcacggcgtgcttggcc 0.827 2 2240 0.46 Histone H2A early V01143 7040 Echinoderm Psammechinus miliaris (sand urchin) -684 (-) cctcttggcgtggatggcg 0.844 2 2240 0.46 Histone H3 early J01173 7042 Echinoderm Strongylocentrotus purpuratus -784 (-) gctcacagcgtgctttgcc 0.834 4 1426 1.44 Histone H3 early J01173 7042 Echinoderm Strongylocentrotus purpuratus -229 (+) actgagtgcgtgagccgaa 0.906 4 1426 1.44 Histone H3 early J01173 7042 Echinoderm Strongylocentrotus purpuratus -114 (-) gtttagcgcgtgacgggaa 0.836 4 1426 1.44 Histone H3 early J01173 7042 Echinoderm Strongylocentrotus purpuratus 52 (-) gcttggtgcgtgccatagt 0.920 4 1426 1.44 Histone H3 late J01175 7044 Echinoderm Lytechinus pictus (painted urchin) -1309 (+) tggtgcggcgtgtgggtcg 0.785 5 1587 1.61 Histone H3 late J01175 7044 Echinoderm Lytechinus pictus (painted urchin) -1021 (+) tcgcttggcgtgctcgcaa 0.847 5 1587 1.61 Histone H3 late J01175 7044 Echinoderm Lytechinus pictus (painted urchin) -864 (-) aggtcttgcgtgataacat 0.925 5 1587 1.61 Histone H3 late J01175 7044 Echinoderm Lytechinus pictus (painted urchin) -580 (+) gtttacggcgtgcgttaga 0.809 5 1587 1.61 Histone H3 late J01175 7044 Echinoderm Lytechinus pictus (painted urchin) 69 (-) gctgcttgcgtggagcctt 0.869 5 1587 1.61 Histone H4 late J01175 7045 Echinoderm Lytechinus pictus (painted urchin) -1202 (-) gtggcgagcgtgcttaaat 0.830 5 1510 1.70 Histone H4 late J01175 7045 Echinoderm Lytechinus pictus (painted urchin) -1148 (-) acgccaagcgtgtcaccat 0.830 5 1510 1.70 Histone H4 late J01175 7045 Echinoderm Lytechinus pictus (painted urchin) -1140 (+) acgcttggcgtggatggcg 0.825 5 1510 1.70 Histone H4 late J01175 7045 Echinoderm Lytechinus pictus (painted urchin) -850 (+) gctgcttgcgtggagcctt 0.869 5 1510 1.70 Histone H4 late J01175 7045 Echinoderm Lytechinus pictus (painted urchin) -201 (-) gtttacggcgtgcgttaga 0.809 5 1510 1.70 Histone H2B early V01143 11059 Echinoderm Psammechinus miliaris (sand urchin) -2815 (-) ccgatcagcgtgtgtttgc 0.801 2 2073 0.49 Histone H2B early V01143 11059 Echinoderm Psammechinus miliaris (sand urchin) -1596 (+) cgactgcgcgtgtataagg 0.810 2 2073 0.49 Histone H2B early V01144 11060 Echinoderm Strongylocentrotus droebachiensis -44 (+) cggccccgcgtgtataaaa 0.809 1 416 1.23 Histone H3 early V01144 11062 Echinoderm Strongylocentrotus droebachiensis 54 (-) gcttggtgcgtgccatagt 0.920 1 332 1.54 Histone H4 early V01143 11063 Echinoderm Psammechinus miliaris (sand urchin) -1491 (-) ccgatcagcgtgtgtttgc 0.801 2 2040 0.50 Histone H4 early V01143 11063 Echinoderm Psammechinus miliaris (sand urchin) -272 (+) cgactgcgcgtgtataagg 0.810 2 2040 0.50 Histone H2B-2 for testis specific X04384 17022 Echinoderm Lytechinus pictus (painted urchin) -98 (+) ttatcatgcgtggtatgat 0.850 1 236 2.17 Histone H2B late L3 X06642 25030 Echinoderm Strongylocentrotus purpuratus -619 (-) atgcccagcgtgtcggtgc 0.770 2 1397 0.73 Histone H2B late L3 X06642 25030 Echinoderm Strongylocentrotus purpuratus -93 (+) gtttctcgcgtgcagtcgg 0.839 2 1397 0.73 Histone H2A late L3 X06642 25031 Echinoderm Strongylocentrotus purpuratus -352 (-) gtttctcgcgtgcagtcgg 0.839 1 1204 0.43 Small nuclear RNA U2 late M58449 30012 Echinoderm Lytechinus variegatus (green urchin) -99 (-) atttgccgcgtggcgcata 0.761 1 994 0.52 Histone H1 beta late M20314 30013 Echinoderm Strongylocentrotus purpuratus -49 (-) atagaatgcgtgcggacgt 0.878 1 879 0.58 Histone H2A early M25281 33006 Echinoderm Paracentrotus lividus (common urchin) -880 (-) cctcttggcgtgaatggcg 0.880 2 1772 0.58 Histone H2A early M25281 33006 Echinoderm Paracentrotus lividus (common urchin) -804 (-) cgtgcatgcgtgggtccta 0.858 2 1772 0.58 Ectoderm enriched RNA 2a X12771 33008 Echinoderm Strongylocentrotus purpuratus -120 (-) gttaagagcgtgtctgcta 0.774 1 515 0.99 Metallothionein A M30606 33013 Echinoderm Strongylocentrotus purpuratus -161 (+) gatagaagcgtgtgcaaaa 0.813 1 1719 0.30 Metallothionein B_1 M59822 33014 Echinoderm Strongylocentrotus purpuratus -159 (+) gatagaagcgtgtgcaaaa 0.813 1 804 0.64 Neuropeptide (ganglion R14) M17196 16028 Mollusc Aplysia californica (California sea hare) 39 (-) agatagtgcgtgtgtttgt 0.824 1 517 0.99 Egg-laying hormone M29354 16030 Mollusc Aplysia californica (California sea hare) -60 (-) caagagggcgtggagccgt 0.796 1 517 0.99 heatshock protein 16K-1 U64837 17012 Nematode Caenorhabditis elegans -1223 (+) ttacagtgcgtgcaacttc 0.863 1 3100 0.17 heatshock protein 16K-48 U64837 17013 Nematode Caenorhabditis elegans -1216 (-) cggggctgcgtgcgcgcgg 0.923 1 3100 0.17 histone H4-A his-10 Z81495 33003 Nematode Caenorhabditis elegans -2680 (+) acaggtagcgtgatgtcat 0.832 4 3100 0.66 histone H4-A his-10 Z81495 33003 Nematode Caenorhabditis elegans -2355 (+) tctcttggcgtgctcgcag 0.851 4 3100 0.66 histone H4-A his-10 Z81495 33003 Nematode Caenorhabditis elegans -1452 (+) gaggagagcgtgcttaaat 0.834 4 3100 0.66 histone H4-A his-10 Z81495 33003 Nematode Caenorhabditis elegans -647 (-) gaggagagcgtgcttaaat 0.834 4 3100 0.66 histone H2A-A his-12 Z81495 33004 Nematode Caenorhabditis elegans -2451 (-) gaggagagcgtgcttaaat 0.834 4 3100 0.66 histone H2A-A his-12 Z81495 33004 Nematode Caenorhabditis elegans -1548 (-) tctcttggcgtgctcgcag 0.851 4 3100 0.66 histone H2A-A his-12 Z81495 33004 Nematode Caenorhabditis elegans -1223 (-) acaggtagcgtgatgtcat 0.832 4 3100 0.66 histone H2A-A his-12 Z81495 33004 Nematode Caenorhabditis elegans -526 (+) agacacggcgtgcttggca 0.817 4 3100 0.66 histone H2A-B his-12 Z81495 55001 Nematode Caenorhabditis elegans -2982 (-) tgagacggcgtgattcgaa 0.809 4 3100 0.66 histone H2A-B his-12 Z81495 55001 Nematode Caenorhabditis elegans -1548 (-) tctcttggcgtgctcgcag 0.851 4 3100 0.66 histone H2A-B his-12 Z81495 55001 Nematode Caenorhabditis elegans -1223 (-) acaggtagcgtgatgtcat 0.832 4 3100 0.66 histone H2A-B his-12 Z81495 55001 Nematode Caenorhabditis elegans -526 (+) agacacggcgtgcttggca 0.817 4 3100 0.66 histone H2A-C his-12 Z81495 55002 Nematode Caenorhabditis elegans -526 (+) agacacggcgtgcttggca 0.817 1 3100 0.17 histone H2A-D his-12 Z81495 55003 Nematode Caenorhabditis elegans -2451 (-) gaggagagcgtgcttaaat 0.834 4 3100 0.66 histone H2A-D his-12 Z81495 55003 Nematode Caenorhabditis elegans -1548 (-) tctcttggcgtgctcgcag 0.851 4 3100 0.66 histone H2A-D his-12 Z81495 55003 Nematode Caenorhabditis elegans -1223 (-) acaggtagcgtgatgtcat 0.832 4 3100 0.66 histone H2A-D his-12 Z81495 55003 Nematode Caenorhabditis elegans -526 (+) agacacggcgtgcttggca 0.817 4 3100 0.66 histone H4-B his-10 Z81495 55004 Nematode Caenorhabditis elegans -2680 (+) acaggtagcgtgatgtcat 0.832 4 3100 0.66 histone H4-B his-10 Z81495 55004 Nematode Caenorhabditis elegans -2355 (+) tctcttggcgtgctcgcag 0.851 4 3100 0.66 histone H4-B his-10 Z81495 55004 Nematode Caenorhabditis elegans -1452 (+) gaggagagcgtgcttaaat 0.834 4 3100 0.66 histone H4-B his-10 Z81495 55004 Nematode Caenorhabditis elegans -647 (-) gaggagagcgtgcttaaat 0.834 4 3100 0.66 histone H4-C his-10 Z81495 55005 Nematode Caenorhabditis elegans -2857 (-) acaggtagcgtgatgtcat 0.832 3 3100 0.50 histone H4-C his-10 Z81495 55005 Nematode Caenorhabditis elegans -2160 (+) agacacggcgtgcttggca 0.817 3 3100 0.50 histone H4-C his-10 Z81495 55005 Nematode Caenorhabditis elegans -647 (-) gaggagagcgtgcttaaat 0.834 3 3100 0.50 histone H2A-E his-12 Z81495 55010 Nematode Caenorhabditis elegans -2451 (-) gaggagagcgtgcttaaat 0.834 4 3100 0.66 histone H2A-E his-12 Z81495 55010 Nematode Caenorhabditis elegans -1548 (-) tctcttggcgtgctcgcag 0.851 4 3100 0.66 histone H2A-E his-12 Z81495 55010 Nematode Caenorhabditis elegans -1223 (-) acaggtagcgtgatgtcat 0.832 4 3100 0.66 histone H2A-E his-12 Z81495 55010 Nematode Caenorhabditis elegans -526 (+) agacacggcgtgcttggca 0.817 4 3100 0.66 heatshock protein 16K-1 U64837 55011 Nematode Caenorhabditis elegans -1044 (-) ttacagtgcgtgcaacttc 0.863 1 3100 0.17 heatshock protein 16K-48 U64837 55012 Nematode Caenorhabditis elegans -2822 (-) ttgttatgcgtggaaaaaa 0.844 3 3100 0.50 heatshock protein 16K-48 U64837 55012 Nematode Caenorhabditis elegans -1661 (+) cggggctgcgtgcgcgcgg 0.923 3 3100 0.50 heatshock protein 16K-48 U64837 55012 Nematode Caenorhabditis elegans -1216 (-) cggggctgcgtgcgcgcgg 0.923 3 3100 0.50 avg 0.99 sd 0.70