Gene or Protein Name EMBL Acc EPD ID Species Position Relative to Start Site Strand Sequence 5'-3' Matrix Similarity Score # of DREs # of bp DRE Density [Early transposon] long terminal repeat X03063 14080 Mus musculus (mouse) -130 (-) gcagtgggcgtggcagaac 0.839 1 293 1.75 Adenosine deaminase M14167 15032 Mus musculus (mouse) 13 (+) aaaaagagcgtggcgggcc 0.808 1 218 2.35 alpha 1 type I collagen K01688 7067 Mus musculus (mouse) 45 (-) ggctcatgcgtggcctcac 0.862 2 320 3.20 alpha 1 type I collagen K01688 7067 Mus musculus (mouse) 30 (-) tcactccgcgtgcctcctg 0.837 2 320 3.20 alpha 2 type I collagen K01832 24026 Mus musculus (mouse) -501 (-) ggtgacagcgtggcgagct 0.824 1 1449 0.35 alpha 2 type IX collagen Z22923 47011 Mus musculus (mouse) -2599 (+) gattaaagcgtgcgccacc 0.849 3 3076 0.50 alpha 2 type IX collagen Z22923 47011 Mus musculus (mouse) -2133 (+) tgaagctgcgtgcctggtg 0.893 3 3076 0.50 alpha 2 type IX collagen Z22923 47011 Mus musculus (mouse) -2103 (+) ctgcggtgcgtggatgaga 0.832 3 3076 0.50 alpha-crystallin V00730 11084 Mus musculus (mouse) -106 (-) ggggagagcgtgcaccgtc 0.846 2 444 2.31 alpha-crystallin V00730 11084 Mus musculus (mouse) -160 (+) ctgctcagcgtgtgttgct 0.819 2 444 2.31 alpha-globin V00714 7072 Mus musculus (mouse) -75 (+) tccaagggcgtgtccaccc 0.812 1 472 1.08 Aspartate aminotransferase mitochondrial X06917 29019 Mus musculus (mouse) -251 (-) ctgcctagcgtgccagttt 0.879 2 728 1.41 Aspartate aminotransferase mitochondrial X06917 29019 Mus musculus (mouse) -29 (-) tccctgggcgtggctagag 0.823 2 728 1.41 beta ^major-globin X00624 23010 Mus musculus (mouse) -788 (+) ttcaaaagcgtggaaggac 0.796 1 1513 0.34 beta 2-Adrenergic receptor X15643 29017 Mus musculus (mouse) -403 (+) tgtgtgtgcgtgtccgggt 0.872 1 2100 0.24 beta-glucuronidase J02836 30088 Mus musculus (mouse) 23 (+) atggagtgcgtgttgggtc 0.819 2 2401 0.43 beta-glucuronidase J02836 30088 Mus musculus (mouse) -441 (+) cctgcctgcgtgtcctttc 0.861 2 2401 0.43 Cellular-(Avian) myeoloblastosis virus oncogene M21169 15047 Mus musculus (mouse) -824 (+) cagaagtgcgtggtaggca 0.885 4 992 2.06 Cellular-(Avian) myeoloblastosis virus oncogene M21169 15047 Mus musculus (mouse) -790 (+) gggcccggcgtgtgtctaa 0.793 4 992 2.06 Cellular-(Avian) myeoloblastosis virus oncogene M21169 15047 Mus musculus (mouse) -290 (-) ggccggggcgtggcgcctt 0.796 4 992 2.06 Cellular-(Avian) myeoloblastosis virus oncogene M21169 15047 Mus musculus (mouse) -136 (+) gcagggcgcgtgcgcactg 0.874 4 992 2.06 Cellular-Abelson murine leukemia virus oncogene 6.5kb X07541 30025 Mus musculus (mouse) -107 (+) tgcggcggcgtgtgggaga 0.781 1 765 0.67 Cellular-FBJ (Finkel-Biskis-Jinkins) osteosarcoma virus oncogene V00727 11144 Mus musculus (mouse) -236 (-) accttccgcgtgtaggatt 0.777 1 653 0.78 Cellular-Moloney murine sarcoma virus oncogene ovary J00372 29022 Mus musculus (mouse) -848 (-) tcagcaagcgtgggaaaac 0.837 2 2030 0.50 Cellular-Moloney murine sarcoma virus oncogene ovary J00372 29022 Mus musculus (mouse) -1447 (+) ttgatatgcgtgcacagaa 0.885 2 2030 0.50 Cellular-Moloney murine sarcoma virus oncogene testis J00372 29021 Mus musculus (mouse) -633 (-) tcagcaagcgtgggaaaac 0.837 2 1815 0.56 Cellular-Moloney murine sarcoma virus oncogene testis J00372 29021 Mus musculus (mouse) -1232 (+) ttgatatgcgtgcacagaa 0.885 2 1815 0.56 Cellular-Rat-derived Kirsten murine sarcoma virus oncogene M16708 16065 Mus musculus (mouse) -306 (+) ggcggccgcgtgcgaacga 0.877 3 730 2.10 Cellular-Rat-derived Kirsten murine sarcoma virus oncogene M16708 16065 Mus musculus (mouse) -624 (-) caaataagcgtgcgttcct 0.857 3 730 2.10 Class I transplantation antigens of major histocompatibility M11847 14075 Mus musculus (mouse) -1334 (-) aatgaatgcgtgcgaccac 0.911 3 2065 0.74 Class I transplantation antigens of major histocompatibility M11847 14075 Mus musculus (mouse) -22 (-) gcgggctgcgtggacttta 0.828 3 2065 0.74 Class I transplantation antigens of major histocompatibility M11847 14075 Mus musculus (mouse) 35 (-) nnnngcagcgtgcacggta 0.803 3 2065 0.74 Class I transplantation antigens of major histocompatibility complex H-2L^d M12483 11156 Mus musculus (mouse) -22 (-) gcgggttgcgtggacttta 0.849 2 596 1.72 Class I transplantation antigens of major histocompatibility complex H-2L^d M12483 11156 Mus musculus (mouse) 35 (-) nnnngcagcgtgcacggta 0.803 2 596 1.72 Class I transplantation antigens of major histocompatibility complex Q10 M12484 11157 Mus musculus (mouse) 35 (-) nnnngcagcgtgcgcggcg 0.838 2 594 1.72 Class I transplantation antigens of major histocompatibility complex Q10 M12484 11157 Mus musculus (mouse) -215 (-) cctcaccgcgtggagacta 0.797 2 594 1.72 "c-myc (cellular homologue of myelocytomatosis virus 29 oncogene), promoter 1." X00195 14066 Mus musculus (mouse) -421 (+) gggacgtgcgtgacgcggt 0.913 2 525 1.95 "c-myc (cellular homologue of myelocytomatosis virus 29 oncogene), promoter 2." X00195 14067 Mus musculus (mouse) -584 (+) gggacgtgcgtgacgcggt 0.913 2 688 1.49 Colony stimulating factor-1 M81316 37007 Mus musculus (mouse) 74 (+) gacagcggcgtggccctcg 0.801 1 875 0.59 Complement C4 M14225 15053 Mus musculus (mouse) -721 (+) cttctgtgcgtgtggagtc 0.875 6 2174 1.41 Complement C4 M14225 15053 Mus musculus (mouse) -235 (-) tgcgtgtgcgtgtccctct 0.849 6 2174 1.41 Complement C4 M14225 15053 Mus musculus (mouse) -259 (-) tgcgtgtgcgtgtgtgtgt 0.839 6 2174 1.41 Complement C4 M14225 15053 Mus musculus (mouse) -311 (-) catgtgtgcgtgtattcag 0.856 6 2174 1.41 Complement C4 M14225 15053 Mus musculus (mouse) -253 (-) tgcatgtgcgtgtgcgtgt 0.846 6 2174 1.41 Complement C4 M14225 15053 Mus musculus (mouse) -229 (-) tttgtgtgcgtgtgcgtgt 0.837 6 2174 1.41 Dihydrofolate reductase V00735 7057 Mus musculus (mouse) -238 (-) ggttgaggcgtgcgccggc 0.859 4 488 4.20 Dihydrofolate reductase V00735 7057 Mus musculus (mouse) 11 (+) aatcctagcgtgaaggctg 0.838 4 488 4.20 Dihydrofolate reductase V00735 24032 Mus musculus (mouse) -178 (-) ggttgaggcgtgcgccggc 0.859 2 428 2.39 Dihydrofolate reductase V00735 24032 Mus musculus (mouse) 71 (+) aatcctagcgtgaaggctg 0.838 2 428 2.39 DNA polymerase beta M16363 16049 Mus musculus (mouse) -43 (+) gcctggcgcgtgacgtcac 0.844 2 753 1.36 DNA polymerase beta M16363 16049 Mus musculus (mouse) -268 (-) ttgtgaggcgtgccggcgc 0.813 2 753 1.36 Ferritin heavy chain X52561 25047 Mus musculus (mouse) -418 (-) aatggaagcgtggcgctgt 0.774 3 1040 1.48 Ferritin heavy chain X52561 25047 Mus musculus (mouse) -356 (-) gcaaagtgcgtgttgttag 0.822 3 1040 1.48 Ferritin heavy chain X52561 25047 Mus musculus (mouse) -114 (-) cctgtgggcgtgttgccca 0.797 3 1040 1.48 Glucose transporter type 1 D10229 39003 Mus musculus (mouse) -454 (-) tacaaccgcgtgtgttatg 0.779 3 1406 1.09 Glucose transporter type 1 D10229 39003 Mus musculus (mouse) -128 (-) ctgagaggcgtggttctgt 0.758 3 1406 1.09 Glucose transporter type 1 D10229 39003 Mus musculus (mouse) 52 (+) cgtcagggcgtggaggtct 0.786 3 1406 1.09 Glutathione S-transferase Ya subunit M19250 26004 Mus musculus (mouse) -28 (+) taaagtagcgtgcacactc 0.851 1 1693 0.30 Glycerol-3-phosphate dehydrogenase cytoplasmic M25558 24042 Mus musculus (mouse) -2662 (+) attaaaggcgtgcgccacc 0.820 2 3100 0.33 Glycerol-3-phosphate dehydrogenase cytoplasmic M25558 24042 Mus musculus (mouse) -2371 (-) ctccctagcgtggagatta 0.793 2 3100 0.33 Glycoprotein 49B U05265 47013 Mus musculus (mouse) -369 (+) agttgcagcgtggtgtagc 0.754 1 2002 0.26 Granulocyte/Macrophage colony stimulating factor X03020 11138 Mus musculus (mouse) -995 (+) tgcgcgcgcgtgcgtgtgt 0.835 4 1234 1.66 Granulocyte/Macrophage colony stimulating factor X03020 11138 Mus musculus (mouse) -991 (+) cgcgcgtgcgtgtgtgcgt 0.878 4 1234 1.66 Granulocyte/Macrophage colony stimulating factor X03020 11138 Mus musculus (mouse) -983 (+) cgtgtgtgcgtgcctggtt 0.921 4 1234 1.66 Histone H1-0 U18295 49009 Mus musculus (mouse) -462 (+) cagggccgcgtgtgttagt 0.814 1 801 0.64 Histone H1-A Y12290 48017 Mus musculus (mouse) -713 (-) caaaaatgcgtgaaagtat 0.899 1 817 0.63 Histone H1-E L26163 48019 Mus musculus (mouse) 45 (-) tggcgaagcgtgtgaggag 0.836 1 1384 0.37 Histone H2A 291A X05862 23007 Mus musculus (mouse) -588 (+) cgacaccgcgtgcttggcc 0.849 2 1080 0.95 Histone H2A 291A X05862 23007 Mus musculus (mouse) -722 (-) tgcacatgcgtggttattg 0.813 2 1080 0.95 Histone H2A(A)-613 U62673 49005 Mus musculus (mouse) -613 (+) cgacacggcgtgcttggcc 0.844 1 1080 0.47 Histone H2B 221 X05864 11069 Mus musculus (mouse) -540 (+) tgttgtagcgtggcagtac 0.824 1 1135 0.45 Histone H2B 291B X05863 23009 Mus musculus (mouse) -556 (-) ctgggccgcgtgaccatcg 0.852 4 1225 1.67 Histone H2B 291B X05863 23009 Mus musculus (mouse) -385 (-) tcggagcgcgtgggcgccg 0.821 4 1225 1.67 Histone H2B 291B X05863 23009 Mus musculus (mouse) -346 (-) gtgggccgcgtgcaccggc 0.843 4 1225 1.67 Histone H2B 291B X05863 23009 Mus musculus (mouse) -43 (+) cataacagcgtgtatatag 0.790 4 1225 1.67 Histone H2B-143 X80328 49007 Mus musculus (mouse) -1617 (-) acgccaagcgtgtcaccat 0.830 4 1935 1.06 Histone H2B-143 X80328 49007 Mus musculus (mouse) -1609 (+) acgcttggcgtggatggcg 0.825 4 1935 1.06 Histone H2B-143 X80328 49007 Mus musculus (mouse) -1373 (-) accggcggcgtgaagaagc 0.819 4 1935 1.06 Histone H2B-143 X80328 49007 Mus musculus (mouse) -507 (-) ctgggccgcgtgaccatcg 0.852 4 1935 1.06 Histone H2B291A X05862 23008 Mus musculus (mouse) -561 (-) ctgggccgcgtgaccatcg 0.852 3 1200 1.28 Histone H2B291A X05862 23008 Mus musculus (mouse) -390 (-) tcggagcgcgtgggcgccg 0.821 3 1200 1.28 Histone H2B291A X05862 23008 Mus musculus (mouse) -351 (-) gtgggccgcgtgcaccggc 0.843 3 1200 1.28 Histone H3.1-221 M32460 49015 Mus musculus (mouse) -55 (+) gtgttgcgcgtgtgcgacg 0.816 2 425 2.41 Histone H3.1-221 M32460 49015 Mus musculus (mouse) -117 (-) ctgataggcgtgtctgctt 0.793 2 425 2.41 Histone H3.1-A X01684 11071 Mus musculus (mouse) -55 (+) gtgttgcgcgtgtgcgacg 0.816 2 425 2.41 Histone H3.1-A X01684 11071 Mus musculus (mouse) -117 (-) ctgataggcgtgtctgctt 0.793 2 425 2.41 Histone H3.2-614 M32461 49016 Mus musculus (mouse) -152 (+) tcaggtggcgtggcgggcc 0.835 1 397 1.29 Histone H3.2-615 U62674 49003 Mus musculus (mouse) -149 (+) tcaggtggcgtggcgggcc 0.835 6 2370 1.30 Histone H3.2-615 U62674 49003 Mus musculus (mouse) -1145 (+) acgcggagcgtgtgggcgc 0.802 6 2370 1.30 Histone H3.2-615 U62674 49003 Mus musculus (mouse) -1520 (-) ttcatttgcgtgcggccgt 0.895 6 2370 1.30 Histone H3.2-615 U62674 49003 Mus musculus (mouse) -1389 (+) tcaggacgcgtgtgagcca 0.828 6 2370 1.30 Histone H3.2-615 U62674 49003 Mus musculus (mouse) -1184 (+) cggtggggcgtgtacaccg 0.822 6 2370 1.30 Histone H3.2-615 U62674 49003 Mus musculus (mouse) -1499 (-) acgacgcgcgtgctcggtg 0.849 6 2370 1.30 Histone H3.2-616 U62675 49004 Mus musculus (mouse) -258 (+) gcacactgcgtgagaaaca 0.927 1 662 0.77 Histone H3.2-E X80328 48009 Mus musculus (mouse) -1613 (+) cgacacggcgtgcttggcc 0.844 2 2711 0.38 Histone H3.2-E X80328 48009 Mus musculus (mouse) -746 (+) ctgggccgcgtgaccatcg 0.852 2 2711 0.38 Histone H3.2-F U62669 48010 Mus musculus (mouse) -1911 (+) cgacacggcgtgcttggcc 0.844 5 2387 1.07 Histone H3.2-F U62669 48010 Mus musculus (mouse) -1211 (+) gtgggccgcgtgcaccggc 0.843 5 2387 1.07 Histone H3.2-F U62669 48010 Mus musculus (mouse) -1172 (+) tcggagcgcgtgggcgccg 0.821 5 2387 1.07 Histone H3.2-F U62669 48010 Mus musculus (mouse) -1001 (+) ctgggccgcgtgaccatcg 0.852 5 2387 1.07 Histone H3.2-F U62669 48010 Mus musculus (mouse) -456 (+) gtaaaacgcgtgtttaaaa 0.764 5 2387 1.07 Hypoxanthine phosphoribosyltransferase K01507 7058 Mus musculus (mouse) -380 (+) attaaaggcgtgcgccacc 0.820 1 946 0.54 Interleukin-1 beta X04964 17078 Mus musculus (mouse) -503 (+) nnnaagtgcgtgtctctcc 0.809 2 601 1.70 "Interleukin-5, Eosinophil differentiation factor/T-cell replacing factor" X06271 25045 Mus musculus (mouse) -351 (-) cttgggagcgtgatcggct 0.848 1 647 0.79 Lactate dehydrogenase X03753 14050 Mus musculus (mouse) -19 (+) ccccgccgcgtgctgctct 0.831 3 1218 1.26 Lactate dehydrogenase X03753 14050 Mus musculus (mouse) -7 (+) ctgctctgcgtgctggagc 0.872 3 1218 1.26 Lactate dehydrogenase X03753 14050 Mus musculus (mouse) 24 (-) agaagcagcgtggccgagc 0.794 3 1218 1.26 Malate dehydrogenase mitochondrial X07295 32002 Mus musculus (mouse) -100 (+) gtctagggcgtgctagaca 0.827 1 619 0.83 Metallothionein I V00835 7054 Mus musculus (mouse) -107 (+) gcggggcgcgtgactatgc 0.846 2 401 2.55 Metallothionein I V00835 7054 Mus musculus (mouse) -97 (+) tgactatgcgtgggctgga 0.856 2 401 2.55 Muscle-specific creatine kinase M13642 27013 Mus musculus (mouse) 82 (+) gagtggggcgtgggagtcc 0.828 2 841 1.22 Muscle-specific creatine kinase M13642 27013 Mus musculus (mouse) -155 (-) gacccaggcgtgcagcttg 0.813 2 841 1.22 Myoglobin X04405 14041 Mus musculus (mouse) -1149 (+) gcgccgggcgtggtggcga 0.789 1 1288 0.40 Nuclear protein Nup475 M58691 36011 Mus musculus (mouse) -879 (-) atcaaaggcgtgtgtcacc 0.769 4 1099 1.86 Nuclear protein Nup475 M58691 36011 Mus musculus (mouse) -351 (-) ggcgtgtgcgtgtgagaca 0.887 4 1099 1.86 Nuclear protein Nup475 M58691 36011 Mus musculus (mouse) -345 (-) actgagggcgtgtgcgtgt 0.793 4 1099 1.86 Nuclear protein Nup475 M58691 36011 Mus musculus (mouse) -55 (-) cctgggggcgtggccacta 0.824 4 1099 1.86 Nucleolin X0799 36015 Mus musculus (mouse) -952 (+) gggccaggcgtgccgatac 0.843 8 1981 2.07 Nucleolin X0799 36015 Mus musculus (mouse) -1027 (+) gactacagcgtgagtccca 0.835 8 1981 2.07 Nucleolin X0799 36015 Mus musculus (mouse) -444 (-) ccccgccgcgtggtcctgc 0.791 8 1981 2.07 Nucleolin X0799 36015 Mus musculus (mouse) -592 (-) cagttgtgcgtgtgtgtgt 0.863 8 1981 2.07 Nucleolin X0799 36015 Mus musculus (mouse) -355 (-) ggtggcggcgtggcccgga 0.814 8 1981 2.07 Nucleolin X0799 36015 Mus musculus (mouse) -140 (-) cggggcagcgtgaggcggg 0.865 8 1981 2.07 Nucleolin X0799 36015 Mus musculus (mouse) -291 (+) tgcgcaggcgtggggagag 0.820 8 1981 2.07 Nucleolin X0799 36015 Mus musculus (mouse) -724 (+) cctgtgagcgtggtcacag 0.823 8 1981 2.07 Ornithine decarboxylase M19521 37001 Mus musculus (mouse) -283 (+) gtggtgcgcgtgcgcaggc 0.875 3 466 3.30 Ornithine decarboxylase M19521 37001 Mus musculus (mouse) -261 (+) ccgcagggcgtgtccgaca 0.821 3 466 3.30 Ornithine decarboxylase M19521 37001 Mus musculus (mouse) -205 (-) gcgcagcgcgtgcccaccc 0.875 3 466 3.30 P-glycoprotein 1b M60348 35016 Mus musculus (mouse) -617 (-) gatatttgcgtgtagcagg 0.859 2 1271 0.81 P-glycoprotein 1b M60348 35016 Mus musculus (mouse) -1136 (-) tcaacatgcgtgggacttg 0.862 2 1271 0.81 Pregnancy-specific beta-1-glycoprotein 5 M32628 30026 Mus musculus (mouse) -353 (-) ctacggtgcgtgttcattg 0.834 3 574 2.68 Pregnancy-specific beta-1-glycoprotein 5 M32628 30026 Mus musculus (mouse) -141 (-) ccctgccgcgtgtccggga 0.834 3 574 2.68 Pregnancy-specific beta-1-glycoprotein 5 M32628 30026 Mus musculus (mouse) -91 (+) ggggagggcgtggagcctt 0.781 3 574 2.68 Pronatriodilatin K02781 11133 Mus musculus (mouse) 76 (-) catgctggcgtgggtcggg 0.855 3 571 2.69 Restriction endonuclease HpaII tiny fragments transcript-A X05830 17101 Mus musculus (mouse) -999 (+) gaagctggcgtggcgaggt 0.853 6 1933 1.59 Restriction endonuclease HpaII tiny fragments transcript-A X05830 17101 Mus musculus (mouse) -356 (-) cagcgcagcgtgtggccct 0.823 6 1933 1.59 Restriction endonuclease HpaII tiny fragments transcript-A X05830 17101 Mus musculus (mouse) -233 (-) gacgctggcgtgagcggct 0.901 6 1933 1.59 Restriction endonuclease HpaII tiny fragments transcript-A X05830 17101 Mus musculus (mouse) -189 (+) agtgcgcgcgtgggtcgcc 0.822 6 1933 1.59 Restriction endonuclease HpaII tiny fragments transcript-A X05830 17102 Mus musculus (house mouse) -512 (+) ggggtctgcgtgcaaccct 0.919 6 952 3.23 Restriction endonuclease HpaII tiny fragments transcript-A X05830 17102 Mus musculus (house mouse) -368 (-) gggcggcgcgtgaccttgt 0.837 6 952 3.23 Ribosomal protein L30 K02928 11075 Mus musculus (mouse) -340 (-) gtcttgggcgtgctccggg 0.833 1 562 0.91 Small nuclear RNA U1a M14121 17028 Mus musculus (mouse) -17 (-) atgagttgcgtggccacgg 0.870 1 319 1.61 Small nuclear RNA U1b Y00131 17029 Mus musculus (mouse) -233 (+) ggtatgggcgtggtgtatg 0.768 1 1044 0.49 Small nuclear RNA U2 K00027 17034 Mus musculus (mouse) -27 (+) gtatggggcgtgtgggcgc 0.792 2 247 4.15 Small nuclear RNA U2 K00027 17034 Mus musculus (mouse) -95 (+) gtcgggcgcgtgtttgcgg 0.776 2 247 4.15 Submaxillary gland kallikrein-1 V00829 7096 Mus musculus (mouse) -2651 (-) ccttccagcgtgctggagt 0.838 1 3100 0.17 Submaxillary gland kallikrein-5 Y00500 25022 Mus musculus (mouse) -565 (-) gcgagctgcgtgtagtggt 0.854 1 710 0.72 Testicular histone H1 X72805 49013 Mus musculus (mouse) -202 (+) aaaagtcgcgtggaatcta 0.811 2 2100 0.49 Testicular histone H1 X72805 49013 Mus musculus (mouse) -15 (-) agtgggggcgtgcgggggg 0.850 2 2100 0.49 Thyroglobulin X06162 24029 Mus musculus (mouse) -640 (+) tagcttagcgtggcagggt 0.858 1 904 0.57 Troponin I (inhibitory subunit) cardiac Z22784 47001 Mus musculus (mouse) -1421 (+) ggggcttgcgtggcccccg 0.900 1 1658 0.31 Tyrosine aminotransferase X02823 14049 Mus musculus (mouse) -617 (+) aatgagcgcgtgattctat 0.799 1 790 0.65