Gene or Protein Name EMBL Acc EPD ID Species Position Relative to Start Site Strand Sequence 5'-3' Matrix Similarity Score # of DREs # of bp DRE Density Aldolase A X04260 17062 Rattus norvegicus (Norway rat) -495 (+) tccctatgcgtgctctgga 0.877 2 1561 0.66 Aldolase A X04260 17063 Rattus norvegicus (Norway rat) -542 (+) tccctatgcgtgctctgga 0.877 2 1608 0.64 Aldolase B X02283 11118 Rattus norvegicus (Norway rat) -140 (-) gattggcgcgtgaacagcc 0.866 2 971 1.05 Aldolase B X02283 11118 Rattus norvegicus (Norway rat) -181 (+) tctacgagcgtgaggagtg 0.859 2 971 1.05 alpha-fibrinogen X86561 14035 Rattus norvegicus (Norway rat) -1339 (-) acttatagcgtgcatgtct 0.830 2 1877 0.55 alpha-fibrinogen X86561 14035 Rattus norvegicus (Norway rat) -1002 (+) tcgcttagcgtgaggtcct 0.861 2 1877 0.55 alpha-lactalbumin X00461 7091 Rattus norvegicus (Norway rat) 53 (+) gttcctagcgtgtatttcg 0.788 1 1347 0.38 Aspartate aminotransferase cytosolic J05263 32004 Rattus norvegicus (Norway rat) -532 (+) gggtacagcgtgtccaggc 0.826 3 730 2.10 Aspartate aminotransferase cytosolic J05263 32004 Rattus norvegicus (Norway rat) -264 (-) tggcatagcgtgttccaat 0.796 3 730 2.10 Aspartate aminotransferase cytosolic J05263 32004 Rattus norvegicus (Norway rat) -234 (-) ggaggaggcgtgggcaaag 0.820 3 730 2.10 Carbamyl-phosphate synthetase I J02805 30055 Rattus norvegicus (Norway rat) -298 (+) cagtaaagcgtgtgacctt 0.831 2 1150 0.89 Carbamyl-phosphate synthetase I J02805 30055 Rattus norvegicus (Norway rat) -229 (-) gacccaggcgtggtaaaca 0.814 2 1150 0.89 c-myc (cellular homologue of myelocytomatosis virus 29 oncogene) Y00396 16061 Rattus norvegicus (Norway rat) -417 (+) gagacgtgcgtgacgcggc 0.914 8 2104 1.95 c-myc (cellular homologue of myelocytomatosis virus 29 oncogene) Y00396 16061 Rattus norvegicus (Norway rat) -1649 (-) gcgtgtagcgtgtgtaagg 0.836 8 2104 1.95 c-myc (cellular homologue of myelocytomatosis virus 29 oncogene) Y00396 16061 Rattus norvegicus (Norway rat) -1642 (-) tacagtagcgtgtagcgtg 0.804 8 2104 1.95 c-myc (cellular homologue of myelocytomatosis virus 29 oncogene) Y00396 16061 Rattus norvegicus (Norway rat) -346 (-) ttgtcctgcgtgtattagt 0.813 8 2104 1.95 c-myc (cellular homologue of myelocytomatosis virus 29 oncogene) Y00396 16062 Rattus norvegicus (Norway rat) -582 (+) gagacgtgcgtgacgcggc 0.914 8 2269 1.81 c-myc (cellular homologue of myelocytomatosis virus 29 oncogene) Y00396 16062 Rattus norvegicus (Norway rat) -1814 (-) gcgtgtagcgtgtgtaagg 0.836 8 2269 1.81 c-myc (cellular homologue of myelocytomatosis virus 29 oncogene) Y00396 16062 Rattus norvegicus (Norway rat) -1807 (-) tacagtagcgtgtagcgtg 0.804 8 2269 1.81 c-myc (cellular homologue of myelocytomatosis virus 29 oncogene) Y00396 16062 Rattus norvegicus (Norway rat) -511 (-) ttgtcctgcgtgtattagt 0.813 8 2269 1.81 Constitutive analogue of heatshock gene/protein 73K Y00054 15051 Rattus norvegicus (Norway rat) 60 (-) tcaccttgcgtgtaggccc 0.868 3 523 2.94 Constitutive analogue of heatshock gene/protein 73K Y00054 15051 Rattus norvegicus (Norway rat) -224 (+) ggggcgagcgtgaaagttc 0.845 3 523 2.94 Constitutive analogue of heatshock gene/protein 73K Y00054 15051 Rattus norvegicus (Norway rat) -353 (-) tacgcatgcgtgacccgtc 0.902 3 523 2.94 Corticotropin-releasing factor M54987 30038 Rattus norvegicus (Norway rat) -110 (-) ctcgattgcgtgctgcctc 0.882 2 437 2.34 Corticotropin-releasing factor M54987 30038 Rattus norvegicus (Norway rat) -63 (+) aaatgctgcgtgctttctg 0.855 2 437 2.34 Creatine kinase B M18668 30066 Rattus norvegicus (Norway rat) -816 (+) cgtacctgcgtgtgtggga 0.878 2 1044 0.98 Creatine kinase B M18668 30066 Rattus norvegicus (Norway rat) 6 (+) ttcttctgcgtgcgcccgg 0.884 2 1044 0.98 cytochrome C somatic M19870 27012 Rattus norvegicus (Norway rat) -295 (-) ccggcctgcgtgttgggga 0.865 3 827 1.86 cytochrome C somatic M19870 27012 Rattus norvegicus (Norway rat) -263 (-) acgtaaggcgtggacgtgg 0.770 3 827 1.86 cytochrome C somatic M19870 27012 Rattus norvegicus (Norway rat) -20 (+) cgggccggcgtgtccttgg 0.809 3 827 1.86 "Cytochrome P-450 IA1, methylcholanthrene-inducible" K02246 17065 Rattus norvegicus (Norway rat) -548 (-) taagctagcgtgagaagtg 0.905 2 666 1.54 "Cytochrome P-450 IA1, methylcholanthrene-inducible" K02246 17065 Rattus norvegicus (Norway rat) -57 (+) gaaggaggcgtggccaaca 0.814 2 666 1.54 "Cytochrome P-450 IIB2, Phenobarbital-inducible" Y00410 7080 Rattus norvegicus (Norway rat) -832 (+) caggcttgcgtgtagtgtg 0.886 3 1433 1.07 "Cytochrome P-450 IIB2, Phenobarbital-inducible" Y00410 7080 Rattus norvegicus (Norway rat) -80 (+) gcaggaggcgtgaacatct 0.837 3 1433 1.07 "Cytochrome P-450 IIB2, Phenobarbital-inducible" Y00410 7080 Rattus norvegicus (Norway rat) -303 (-) tgtgtgtgcgtgttctata 0.816 3 1433 1.07 "Cytochrome P-450 XVIIA1, steroid 17-alpha-hydroxylase" Z11902 35052 Rattus norvegicus (Norway rat) -814 (-) tctgccggcgtgtgcgcac 0.817 1 3100 0.17 DNA polymerase beta M19679 23014 Rattus norvegicus (Norway rat) -42 (+) gcctggcgcgtgacgtcac 0.844 2 176 5.82 DNA polymerase beta M19679 23015 Rattus norvegicus (Norway rat) -86 (+) gcctggcgcgtgacgtcac 0.844 2 220 4.65 Elastase II L00118 29006 Rattus norvegicus (Norway rat) -1014 (+) tgaccctgcgtgtgagatc 0.871 1 1614 0.32 Ferritin heavy chain M18051 29014 Rattus norvegicus (Norway rat) -134 (-) cagcagtgcgtgggcgggg 0.895 2 278 3.68 Ferritin heavy chain M18051 29014 Rattus norvegicus (Norway rat) -112 (-) cctgtaggcgtgttgccca 0.791 2 278 3.68 Ferritin light chain J02741 25048 Rattus norvegicus (Norway rat) -102 (-) ggcggtggcgtgaggtggg 0.869 2 471 2.17 Ferritin light chain J02741 25048 Rattus norvegicus (Norway rat) -191 (+) ccaaggcgcgtgacttcaa 0.849 2 471 2.17 Fibronectin X05831 17049 Rattus norvegicus (Norway rat) -707 (-) ggtgagcgcgtgtcaaagg 0.835 2 1391 0.74 Fibronectin X05831 17049 Rattus norvegicus (Norway rat) -969 (+) gaacgtggcgtggacctaa 0.801 2 1391 0.74 gamma-fibrinogen X05860 7094 Rattus norvegicus (Norway rat) -382 (+) agtaatagcgtgtggctac 0.794 2 1585 0.65 gamma-fibrinogen X05860 7094 Rattus norvegicus (Norway rat) -281 (-) agaggctgcgtgttgcaat 0.822 2 1585 0.65 gene 33 X07267 30041 Rattus norvegicus (Norway rat) -147 (-) agcctttgcgtggggcccg 0.873 1 1484 0.35 Growth hormone V01239 7104 Rattus norvegicus (Norway rat) -237 (+) agatcttgcgtgaccattg 0.906 1 501 1.02 Gutathione S-transferase Ya subunit M14985 30001 Rattus norvegicus (Norway rat) -29 (+) taaagtggcgtgcacactc 0.850 1 190 2.69 Hexokinase II U19605 45001 Rattus norvegicus (Norway rat) -392 (+) gattgtggcgtgtgctgct 0.848 3 1569 0.98 Hexokinase II U19605 45001 Rattus norvegicus (Norway rat) -333 (-) ggggggcgcgtgatcacgg 0.845 3 1569 0.98 Hexokinase II U19605 45001 Rattus norvegicus (Norway rat) -849 (+) gtgtcaggcgtgagctgag 0.853 3 1569 0.98 Insulin-like growth factor II X17012 25032 Rattus norvegicus (Norway rat) -367 (-) accaactgcgtggcacccc 0.872 6 3100 0.99 Insulin-like growth factor II X17012 25032 Rattus norvegicus (Norway rat) -1699 (-) gtccggtgcgtgtttgggg 0.838 6 3100 0.99 Insulin-like growth factor II X17012 25032 Rattus norvegicus (Norway rat) -1273 (-) aagtggcgcgtgtttcgga 0.782 6 3100 0.99 Insulin-like growth factor II X17012 25032 Rattus norvegicus (Norway rat) 11 (+) cggagctgcgtgaggccag 0.907 6 3100 0.99 Insulin-like growth factor II X17012 25032 Rattus norvegicus (Norway rat) -349 (-) catgggcgcgtggtgcgaa 0.808 6 3100 0.99 Insulin-like growth factor II X17012 25032 Rattus norvegicus (Norway rat) 67 (-) cgggcgggcgtgggccagg 0.830 6 3100 0.99 Insulin-like growth factor II X17012 25033 Rattus norvegicus (Norway rat) -2355 (-) accaactgcgtggcacccc 0.872 6 3100 0.99 Insulin-like growth factor II X17012 25033 Rattus norvegicus (Norway rat) -1591 (-) gggtcaggcgtggcggcgc 0.803 6 3100 0.99 Insulin-like growth factor II X17012 25033 Rattus norvegicus (Norway rat) -419 (-) gattggggcgtgtgtgggt 0.821 6 3100 0.99 Insulin-like growth factor II X17012 25033 Rattus norvegicus (Norway rat) -1977 (+) cggagctgcgtgaggccag 0.907 6 3100 0.99 Insulin-like growth factor II X17012 25033 Rattus norvegicus (Norway rat) -2337 (-) catgggcgcgtggtgcgaa 0.808 6 3100 0.99 Insulin-like growth factor II X17012 25033 Rattus norvegicus (Norway rat) -1921 (-) cgggcgggcgtgggccagg 0.830 6 3100 0.99 Insulin-like growth factor II X17012 28008 Rattus norvegicus (Norway rat) 52 (-) gtccggtgcgtgtttgggg 0.838 2 3100 0.33 Insulin-like growth factor II X17012 28008 Rattus norvegicus (Norway rat) -2741 (+) ctcaggcgcgtgctccgtg 0.841 2 3100 0.33 Luteinizing hormone-beta J00749 30075 Rattus norvegicus (Norway rat) -581 (+) ggtgtgagcgtgtgaagcc 0.863 1 895 0.57 Myosin heavy chain skeletal muscle X04267 16034 Rattus norvegicus (Norway rat) -1216 (-) ctggagagcgtgctgagct 0.848 1 1510 0.34 Myosin light chain 1-f M12017 24037 Rattus norvegicus (Norway rat) -71 (+) tccagccgcgtgtgtcaag 0.799 1 906 0.57 "N5 2.3, 2.7 kb" J05467 30023 Rattus norvegicus (Norway rat) -1304 (-) gcgaatggcgtgaggcccc 0.866 6 1632 1.88 "N5 2.3, 2.7 kb" J05467 30023 Rattus norvegicus (Norway rat) -329 (+) gggcgtggcgtggtggtgc 0.787 6 1632 1.88 "N5 2.3, 2.7 kb" J05467 30023 Rattus norvegicus (Norway rat) -334 (+) ggcgtgggcgtggcgtggt 0.812 6 1632 1.88 "N5 2.3, 2.7 kb" J05467 30023 Rattus norvegicus (Norway rat) -848 (-) tttctctgcgtgggttgaa 0.839 6 1632 1.88 "N5 2.3, 2.7 kb" J05467 30023 Rattus norvegicus (Norway rat) -340 (+) tataggggcgtgggcgtgg 0.792 6 1632 1.88 "N5 2.3, 2.7 kb" J05467 30023 Rattus norvegicus (Norway rat) -1191 (-) ttcccaggcgtgcaggttt 0.788 6 1632 1.88 Nucleolin M22090 36016 Rattus norvegicus (Norway rat) -1021 (+) gggccgggcgtgacgacgc 0.854 7 1300 2.76 Nucleolin M22090 36016 Rattus norvegicus (Norway rat) 68 (+) cgtcttcgcgtgggttccg 0.841 7 1300 2.76 Nucleolin M22090 36016 Rattus norvegicus (Norway rat) -713 (+) acctaccgcgtgaggtcag 0.830 7 1300 2.76 Nucleolin M22090 36016 Rattus norvegicus (Norway rat) -661 (-) cgcgcgcgcgtgtgtgtgt 0.815 7 1300 2.76 Nucleolin M22090 36016 Rattus norvegicus (Norway rat) -139 (-) caggacggcgtgggtcggg 0.825 7 1300 2.76 Nucleolin M22090 36016 Rattus norvegicus (Norway rat) -157 (-) gcctaaagcgtgggggagg 0.798 7 1300 2.76 Nucleolin M22090 36016 Rattus norvegicus (Norway rat) -290 (+) tgcgcaggcgtgtacgcag 0.792 7 1300 2.76 Phosphoenolpyruvate carboxykinase hepatic cytosolic K03243 11117 Rattus norvegicus (Norway rat) -1047 (+) tcaattggcgtgaaggtct 0.832 1 1289 0.40 Preprotachykinin M34159 30009 Rattus norvegicus (Norway rat) -44 (-) atctcaggcgtgatgagcc 0.818 3 964 1.59 Preprotachykinin M34159 30009 Rattus norvegicus (Norway rat) -80 (+) gaaagtcgcgtggggagag 0.856 3 964 1.59 Preprotachykinin M34159 30009 Rattus norvegicus (Norway rat) -131 (-) tttgcttgcgtgatagagt 0.898 3 964 1.59 Preprovasopressin X01637 7100 Rattus norvegicus (Norway rat) 8 (-) gggcactgcgtgcagctct 0.870 2 468 2.19 Preprovasopressin X01637 7100 Rattus norvegicus (Norway rat) -68 (-) ggcgacagcgtggctgcta 0.786 2 468 2.19 "Proopiomelanocortin, adrenocorticotropic hormone/beta lipotropic" X03171 25006 Rattus norvegicus (Norway rat) -121 (+) ccccttcgcgtggccgggg 0.867 1 810 0.63 Pyruvate kinase L-type X05684 16052 Rattus norvegicus (Norway rat) -469 (-) ttccaaagcgtggaactgt 0.766 1 3100 0.17 Pyruvate kinase R-type X05684 38002 Rattus norvegicus (Norway rat) 29 (-) ttccaaagcgtggaactgt 0.766 1 2797 0.18 Small nuclear RNA U1 18-5 X12936 24011 Rattus norvegicus (Norway rat) -156 (+) gtgtaccgcgtgacaggcg 0.872 5 675 3.79 Small nuclear RNA U1 18-5 X12936 24011 Rattus norvegicus (Norway rat) -147 (+) gtgacaggcgtgtgatttc 0.796 5 675 3.79 Small nuclear RNA U1 18-5 X12936 24011 Rattus norvegicus (Norway rat) -31 (+) gtggagggcgtgctggctg 0.806 5 675 3.79 Small nuclear RNA U1 18-5 X12936 24011 Rattus norvegicus (Norway rat) -46 (+) taggagtgcgtgtgggtgg 0.838 5 675 3.79 Small nuclear RNA U1 18-5 X12936 24011 Rattus norvegicus (Norway rat) -99 (+) tgggggggcgtgagaccga 0.852 5 675 3.79 Small nuclear RNA U1 6-6(A) X12931 23016 Rattus norvegicus (Norway rat) -595 (+) acggatggcgtgtggtcta 0.799 2 881 1.16 Small nuclear RNA U1 6-6(A) X12931 23016 Rattus norvegicus (Norway rat) -238 (+) gtcctgggcgtggcctatg 0.788 2 881 1.16 Small nuclear RNA U1 6-6(B) X12932 23017 Rattus norvegicus (Norway rat) -238 (+) gtcctgggcgtggcctatg 0.788 1 790 0.65 Small nuclear RNA U2 K00034 17035 Rattus norvegicus (Norway rat) -222 (+) cagagtcgcgtgcgcgcgc 0.893 3 520 2.95 Small nuclear RNA U2 K00034 17035 Rattus norvegicus (Norway rat) -262 (-) gcgaggggcgtggcgacac 0.819 3 520 2.95 Small nuclear RNA U2 K00034 17035 Rattus norvegicus (Norway rat) -24 (+) cttggctgcgtgctgggtg 0.882 3 520 2.95 Small nuclear RNA U3A' X02722 17037 Rattus norvegicus (Norway rat) -42 (+) ggctgccgcgtgtgacgtc 0.839 1 650 0.79 Somatostatin K02248 16057 Rattus norvegicus (Norway rat) -220 (+) ctgtgtggcgtggagaatt 0.804 2 875 1.17 Thyrotropin-releasing hormone M23631 30077 Rattus norvegicus (Norway rat) -308 (+) gatgtctgcgtgcatttgt 0.867 1 507 1.01 Transin M13012 15037 Rattus norvegicus (Norway rat) -417 (+) acagacagcgtgggctgtg 0.809 1 1107 0.46 Transition protein 1 X07284 33021 Rattus norvegicus (Norway rat) -72 (-) aaaaggggcgtggcttagc 0.781 1 227 2.26 Tropomyosin-alpha (skeletal muscle alpha) J05467 25017 Rattus norvegicus (Norway rat) -170 (+) gcgaatggcgtgaggcccc 0.866 6 1632 1.88 Tropomyosin-alpha (skeletal muscle alpha) J05467 25017 Rattus norvegicus (Norway rat) -1145 (-) gggcgtggcgtggtggtgc 0.787 6 1632 1.88 Tropomyosin-alpha (skeletal muscle alpha) J05467 25017 Rattus norvegicus (Norway rat) -1140 (-) ggcgtgggcgtggcgtggt 0.812 6 1632 1.88 Tropomyosin-alpha (skeletal muscle alpha) J05467 25017 Rattus norvegicus (Norway rat) -626 (+) tttctctgcgtgggttgaa 0.839 6 1632 1.88 Tropomyosin-alpha (skeletal muscle alpha) J05467 25017 Rattus norvegicus (Norway rat) -1134 (-) tataggggcgtgggcgtgg 0.792 6 1632 1.88 Tropomyosin-alpha (skeletal muscle alpha) J05467 25017 Rattus norvegicus (Norway rat) -283 (+) ttcccaggcgtgcaggttt 0.788 6 1632 1.88 Tropomyosin-beta (skeletal muscle beta) L00372 25019 Rattus norvegicus (Norway rat) -389 (-) agagaccgcgtgccctccc 0.840 3 606 2.53 Tropomyosin-beta (skeletal muscle beta) L00372 25019 Rattus norvegicus (Norway rat) -353 (-) tttcagggcgtgacgtcac 0.806 3 606 2.53 Tropomyosin-beta (skeletal muscle beta) L00372 25019 Rattus norvegicus (Norway rat) -487 (+) actcgaggcgtgcaggaga 0.807 3 606 2.53 Tyrosin hydroxylase X04914 15033 Rattus norvegicus (Norway rat) -102 (+) acagcaggcgtggagagga 0.798 1 268 1.91