Gene or Protein Name EMBL Acc EPD ID Species Position Relative to Start Site Strand Sequence 5'-3' Matrix Similarity Score # of DREs # of bp in promoter DRE Density Long terminal repeat J02029 7124 Human T-cell leukemia virus type I 10 (-) ggcgggcgcgtgaaggaga 0.821 4 476 4.30 Long terminal repeat J02029 7124 Human T-cell leukemia virus type I 43 (-) tcaaccggcgtggatggcg 0.805 4 476 4.30 Long terminal repeat J02029 7124 Human T-cell leukemia virus type I -29 (+) tataaaagcgtggagacag 0.780 4 476 4.30 Long terminal repeat J02029 7124 Human T-cell leukemia virus type I -68 (-) gccatatgcgtgccatgaa 0.930 4 476 4.30 Long terminal repeat K02007 7125 Human immunodeficiency virus type 1 -81 (+) cagggaggcgtggcctggg 0.829 1 3100 0.17 Long terminal repeat V01197 7126 (Avian) Rous sarcoma virus -2823 (-) caggaccgcgtgtcgaata 0.808 7 3100 1.16 Long terminal repeat V01197 7126 (Avian) Rous sarcoma virus -2663 (+) aagatcggcgtggacagcg 0.816 7 3100 1.16 Long terminal repeat V01197 7126 (Avian) Rous sarcoma virus -1949 (+) cgccgcagcgtgccggggc 0.863 7 3100 1.16 Long terminal repeat V01197 7126 (Avian) Rous sarcoma virus -1524 (-) actgtgtgcgtgaggtgat 0.906 7 3100 1.16 Long terminal repeat V01197 7126 (Avian) Rous sarcoma virus -1396 (+) caaggacgcgtgggaaatc 0.845 7 3100 1.16 Long terminal repeat V01197 7126 (Avian) Rous sarcoma virus -948 (-) cgatgaggcgtgccagccc 0.879 7 3100 1.16 Long terminal repeat V01197 7126 (Avian) Rous sarcoma virus -582 (+) gtacgaggcgtgacctaca 0.821 7 3100 1.16 Immediate early gene-I X14112 7128 Human herpes simplex virus type 1 -2059 (+) ccgggcggcgtgcgcgcgc 0.872 7 3100 1.16 Immediate early gene-I X14112 7128 Human herpes simplex virus type 1 -2040 (+) gcggcgggcgtggggggcg 0.842 7 3100 1.16 Immediate early gene-I X14112 7128 Human herpes simplex virus type 1 -1658 (-) agcatgtgcgtgcagaggc 0.892 7 3100 1.16 Immediate early gene-I X14112 7128 Human herpes simplex virus type 1 -1621 (-) acagagagcgtgccggggt 0.851 7 3100 1.16 Immediate early gene-I X14112 7128 Human herpes simplex virus type 1 -1513 (-) gagttgggcgtggaggtta 0.769 7 3100 1.16 Immediate early gene-I X14112 7128 Human herpes simplex virus type 1 -1280 (+) ccgcccggcgtgggcccgg 0.835 7 3100 1.16 Immediate early gene-I X14112 7128 Human herpes simplex virus type 1 -40 (+) gggaaaggcgtggggtata 0.775 7 3100 1.16 Immediate early gene-II X14112 7129 Human herpes simplex virus type 1 -2562 (+) gcggcccgcgtggaccccg 0.821 12 3100 1.98 Immediate early gene-II X14112 7129 Human herpes simplex virus type 1 -2050 (+) cgggcctgcgtgcggaagg 0.923 12 3100 1.98 Immediate early gene-II X14112 7129 Human herpes simplex virus type 1 -1978 (-) cgggtcggcgtgcgcggcg 0.890 12 3100 1.98 Immediate early gene-II X14112 7129 Human herpes simplex virus type 1 -1951 (-) gggcggggcgtgaaaatgg 0.848 12 3100 1.98 Immediate early gene-II X14112 7129 Human herpes simplex virus type 1 -1729 (+) gatagtcgcgtgcatcgaa 0.862 12 3100 1.98 Immediate early gene-II X14112 7129 Human herpes simplex virus type 1 -1702 (-) ttcgccggcgtgttcggga 0.778 12 3100 1.98 Immediate early gene-II X14112 7129 Human herpes simplex virus type 1 -1509 (+) cgcctgtgcgtgtccttgt 0.859 12 3100 1.98 Immediate early gene-II X14112 7129 Human herpes simplex virus type 1 -1454 (-) gtaaacagcgtgtgcaggc 0.816 12 3100 1.98 Immediate early gene-II X14112 7129 Human herpes simplex virus type 1 -1430 (-) gagcatggcgtgccggcgt 0.863 12 3100 1.98 Immediate early gene-II X14112 7129 Human herpes simplex virus type 1 -1193 (-) gatatgggcgtggttgcgc 0.783 12 3100 1.98 Immediate early gene-II X14112 7129 Human herpes simplex virus type 1 -910 (+) gtatcgagcgtgttcctgc 0.770 12 3100 1.98 Immediate early gene-II X14112 7129 Human herpes simplex virus type 1 22 (-) caccgaagcgtgaccgtgg 0.843 12 3100 1.98 Immediate early gene-III X14112 7130 Human herpes simplex virus type 1 -2982 (+) gaccgtggcgtggaccccg 0.823 10 3100 1.65 Immediate early gene-III X14112 7130 Human herpes simplex virus type 1 -2909 (+) cagtacggcgtggtactgc 0.796 10 3100 1.65 Immediate early gene-III X14112 7130 Human herpes simplex virus type 1 -2772 (+) gtgttgtgcgtgtatgggc 0.846 10 3100 1.65 Immediate early gene-III X14112 7130 Human herpes simplex virus type 1 -2592 (+) catgtccgcgtggtctgtt 0.812 10 3100 1.65 Immediate early gene-III X14112 7130 Human herpes simplex virus type 1 -2180 (+) gacgcgagcgtgtggtccg 0.818 10 3100 1.65 Immediate early gene-III X14112 7130 Human herpes simplex virus type 1 -1304 (+) cgcttgcgcgtgcccaggg 0.890 10 3100 1.65 Immediate early gene-III X14112 7130 Human herpes simplex virus type 1 -1162 (-) gaccgttgcgtggaccgct 0.892 10 3100 1.65 Immediate early gene-III X14112 7130 Human herpes simplex virus type 1 -847 (+) cgcgtccgcgtgtcccttt 0.807 10 3100 1.65 Immediate early gene-III X14112 7130 Human herpes simplex virus type 1 -749 (+) ccggtccgcgtgctccgca 0.866 10 3100 1.65 Immediate early gene-III X14112 7130 Human herpes simplex virus type 1 -152 (+) gcccccggcgtgccggcgt 0.853 10 3100 1.65 Immediate earl gene-IV/V X14112 7131 Human herpes simplex virus type 1 -2947 (-) gacctgcgcgtggccggcg 0.842 13 3100 2.15 Immediate earl gene-IV/V X14112 7131 Human herpes simplex virus type 1 -2880 (-) cctgcgcgcgtggctgcgc 0.829 13 3100 2.15 Immediate earl gene-IV/V X14112 7131 Human herpes simplex virus type 1 -2856 (+) cgcgtcggcgtgcggcggc 0.866 13 3100 2.15 Immediate earl gene-IV/V X14112 7131 Human herpes simplex virus type 1 -2695 (-) gccggccgcgtggccgtcg 0.814 13 3100 2.15 Immediate earl gene-IV/V X14112 7131 Human herpes simplex virus type 1 -2649 (+) ggcgtcggcgtggcgggcg 0.822 13 3100 2.15 Immediate earl gene-IV/V X14112 7131 Human herpes simplex virus type 1 -2346 (+) ggccgccgcgtgcgccagg 0.854 13 3100 2.15 Immediate earl gene-IV/V X14112 7131 Human herpes simplex virus type 1 -2278 (-) accggcagcgtggcgcggg 0.807 13 3100 2.15 Immediate earl gene-IV/V X14112 7131 Human herpes simplex virus type 1 -2191 (-) aacccgcgcgtggtccccg 0.798 13 3100 2.15 Immediate earl gene-IV/V X14112 7131 Human herpes simplex virus type 1 -2135 (+) agcagccgcgtgatcaggg 0.837 13 3100 2.15 Immediate earl gene-IV/V X14112 7131 Human herpes simplex virus type 1 -1648 (+) gcgcctcgcgtgcgtggtc 0.893 13 3100 2.15 Immediate earl gene-IV/V X14112 7131 Human herpes simplex virus type 1 -1644 (+) ctcgcgtgcgtggtcggcc 0.870 13 3100 2.15 Immediate earl gene-IV/V X14112 7131 Human herpes simplex virus type 1 -563 (-) gcccccggcgtgccggcgt 0.853 13 3100 2.15 Immediate earl gene-IV/V X14112 7131 Human herpes simplex virus type 1 34 (-) ccggtccgcgtgctccgca 0.866 13 3100 2.15 beta 33K X14112 7132 Human herpes simplex virus type 1 -2590 (+) gcgcctcgcgtgcgtggtc 0.893 9 3100 1.49 beta 33K X14112 7132 Human herpes simplex virus type 1 -2586 (+) ctcgcgtgcgtggtcggcc 0.870 9 3100 1.49 beta 33K X14112 7132 Human herpes simplex virus type 1 -1505 (-) gcccccggcgtgccggcgt 0.853 9 3100 1.49 beta 33K X14112 7132 Human herpes simplex virus type 1 -908 (-) ccggtccgcgtgctccgca 0.866 9 3100 1.49 beta 33K X14112 7132 Human herpes simplex virus type 1 -810 (-) cgcgtccgcgtgtcccttt 0.807 9 3100 1.49 beta 33K X14112 7132 Human herpes simplex virus type 1 -451 (+) gaccgttgcgtggaccgct 0.892 9 3100 1.49 beta 33K X14112 7132 Human herpes simplex virus type 1 -320 (+) aaagggggcgtgaggaccg 0.849 9 3100 1.49 beta 33K X14112 7132 Human herpes simplex virus type 1 -26 (+) ttaaaaggcgtgccgtccg 0.809 9 3100 1.49 beta 33K X14112 7132 Human herpes simplex virus type 1 9 (-) tcgaggtgcgtgaacacct 0.899 9 3100 1.49 beta 21K X14112 7133 Human herpes simplex virus type 1 -2994 (+) ggccgccgcgtgcgccagg 0.854 11 3100 1.82 beta 21K X14112 7133 Human herpes simplex virus type 1 -2926 (-) accggcagcgtggcgcggg 0.807 11 3100 1.82 beta 21K X14112 7133 Human herpes simplex virus type 1 -2839 (-) aacccgcgcgtggtccccg 0.798 11 3100 1.82 beta 21K X14112 7133 Human herpes simplex virus type 1 -2783 (+) agcagccgcgtgatcaggg 0.837 11 3100 1.82 beta 21K X14112 7133 Human herpes simplex virus type 1 -2296 (+) gcgcctcgcgtgcgtggtc 0.893 11 3100 1.82 beta 21K X14112 7133 Human herpes simplex virus type 1 -2292 (+) ctcgcgtgcgtggtcggcc 0.870 11 3100 1.82 beta 21K X14112 7133 Human herpes simplex virus type 1 -1211 (-) gcccccggcgtgccggcgt 0.853 11 3100 1.82 beta 21K X14112 7133 Human herpes simplex virus type 1 -614 (-) ccggtccgcgtgctccgca 0.866 11 3100 1.82 beta 21K X14112 7133 Human herpes simplex virus type 1 -516 (-) cgcgtccgcgtgtcccttt 0.807 11 3100 1.82 beta 21K X14112 7133 Human herpes simplex virus type 1 -157 (+) gaccgttgcgtggaccgct 0.892 11 3100 1.82 beta 21K X14112 7133 Human herpes simplex virus type 1 -26 (+) aaagggggcgtgaggaccg 0.849 11 3100 1.82 beta 5 kb X14112 7134 Human herpes simplex virus type 1 -2126 (+) ccggctcgcgtgggtgggg 0.868 11 3100 1.82 beta 5 kb X14112 7134 Human herpes simplex virus type 1 -1901 (+) ccggacggcgtgggttgcg 0.830 11 3100 1.82 beta 5 kb X14112 7134 Human herpes simplex virus type 1 -1763 (+) ccgccttgcgtgagtgtcc 0.931 11 3100 1.82 beta 5 kb X14112 7134 Human herpes simplex virus type 1 -1622 (-) cggtatcgcgtgttgtggg 0.818 11 3100 1.82 beta 5 kb X14112 7134 Human herpes simplex virus type 1 -1513 (-) aaccacagcgtgctggccg 0.814 11 3100 1.82 beta 5 kb X14112 7134 Human herpes simplex virus type 1 -1159 (-) cccgcgcgcgtgcacccgc 0.864 11 3100 1.82 beta 5 kb X14112 7134 Human herpes simplex virus type 1 -1119 (+) ggtggcggcgtgtgccgcc 0.830 11 3100 1.82 beta 5 kb X14112 7134 Human herpes simplex virus type 1 -988 (-) aagacgtgcgtgtgaacca 0.892 11 3100 1.82 beta 5 kb X14112 7134 Human herpes simplex virus type 1 -455 (-) tacaggtgcgtgcggtggg 0.898 11 3100 1.82 beta 5 kb X14112 7134 Human herpes simplex virus type 1 -335 (+) ctggaaggcgtggtgtggc 0.777 11 3100 1.82 beta 5 kb X14112 7134 Human herpes simplex virus type 1 -300 (+) ggcatgcgcgtgagcgtag 0.850 11 3100 1.82 beta-Ribonucleotide reductase small subunit X14112 7135 Human herpes simplex virus type 1 -2707 (-) cgaggaggcgtgtgacagc 0.831 16 3100 2.64 beta-Ribonucleotide reductase small subunit X14112 7135 Human herpes simplex virus type 1 -2515 (-) cgtcggcgcgtgtgggtct 0.813 16 3100 2.64 beta-Ribonucleotide reductase small subunit X14112 7135 Human herpes simplex virus type 1 -2384 (-) ttctcgggcgtgagttcca 0.816 16 3100 2.64 beta-Ribonucleotide reductase small subunit X14112 7135 Human herpes simplex virus type 1 -2276 (+) aaaccaagcgtgtcccccc 0.809 16 3100 2.64 beta-Ribonucleotide reductase small subunit X14112 7135 Human herpes simplex virus type 1 -1877 (-) tcgaccagcgtgtgcggtg 0.825 16 3100 2.64 beta-Ribonucleotide reductase small subunit X14112 7135 Human herpes simplex virus type 1 -1745 (-) atgccgcgcgtggcccggc 0.812 16 3100 2.64 beta-Ribonucleotide reductase small subunit X14112 7135 Human herpes simplex virus type 1 -1491 (+) gggctatgcgtgcaggcgt 0.884 16 3100 2.64 beta-Ribonucleotide reductase small subunit X14112 7135 Human herpes simplex virus type 1 -1378 (+) gaccggcgcgtgcgtgtac 0.844 16 3100 2.64 beta-Ribonucleotide reductase small subunit X14112 7135 Human herpes simplex virus type 1 -1374 (+) ggcgcgtgcgtgtacctgg 0.845 16 3100 2.64 beta-Ribonucleotide reductase small subunit X14112 7135 Human herpes simplex virus type 1 -903 (+) ctgggaagcgtgaatctgg 0.806 16 3100 2.64 beta-Ribonucleotide reductase small subunit X14112 7135 Human herpes simplex virus type 1 -835 (+) cgtgcaggcgtgcgtgctg 0.855 16 3100 2.64 beta-Ribonucleotide reductase small subunit X14112 7135 Human herpes simplex virus type 1 -831 (+) caggcgtgcgtgctgatgg 0.894 16 3100 2.64 beta-Ribonucleotide reductase small subunit X14112 7135 Human herpes simplex virus type 1 -800 (-) ggttgtagcgtgctgtcga 0.827 16 3100 2.64 beta-Ribonucleotide reductase small subunit X14112 7135 Human herpes simplex virus type 1 -788 (-) cactggggcgtgggttgta 0.811 16 3100 2.64 beta-Ribonucleotide reductase small subunit X14112 7135 Human herpes simplex virus type 1 -329 (-) agcaggagcgtgttggggc 0.781 16 3100 2.64 beta-Ribonucleotide reductase small subunit X14112 7135 Human herpes simplex virus type 1 -40 (-) cttatatgcgtggaccaga 0.832 16 3100 2.64 beta-thymidine kinase X14112 7136 Human herpes simplex virus type 1 -2785 (-) gcggttggcgtgaacgcaa 0.862 15 3100 2.48 beta-thymidine kinase X14112 7136 Human herpes simplex virus type 1 -2537 (+) agccaatgcgtgcctgctg 0.873 15 3100 2.48 beta-thymidine kinase X14112 7136 Human herpes simplex virus type 1 -2476 (+) gtcgtgggcgtggataacc 0.788 15 3100 2.48 beta-thymidine kinase X14112 7136 Human herpes simplex virus type 1 -1946 (-) cccgacggcgtggcgcacc 0.810 15 3100 2.48 beta-thymidine kinase X14112 7136 Human herpes simplex virus type 1 -1866 (+) tgcatcagcgtggcgatca 0.781 15 3100 2.48 beta-thymidine kinase X14112 7136 Human herpes simplex virus type 1 -1726 (-) ctacctggcgtgcctggcc 0.885 15 3100 2.48 beta-thymidine kinase X14112 7136 Human herpes simplex virus type 1 -1647 (+) gccccgtgcgtgtttcggt 0.860 15 3100 2.48 beta-thymidine kinase X14112 7136 Human herpes simplex virus type 1 -1564 (-) cctgcaggcgtgcggccgg 0.862 15 3100 2.48 beta-thymidine kinase X14112 7136 Human herpes simplex virus type 1 -776 (+) gcgtctggcgtgggaaaac 0.871 15 3100 2.48 beta-thymidine kinase X14112 7136 Human herpes simplex virus type 1 -600 (-) ctcttctgcgtgcccgtgg 0.890 15 3100 2.48 beta-thymidine kinase X14112 7136 Human herpes simplex virus type 1 -318 (-) gtcagccgcgtgacccggc 0.847 15 3100 2.48 beta-thymidine kinase X14112 7136 Human herpes simplex virus type 1 -78 (-) tgcatctgcgtgttcgaat 0.833 15 3100 2.48 beta-thymidine kinase X14112 7136 Human herpes simplex virus type 1 -21 (+) aggtgacgcgtgtggcctc 0.786 15 3100 2.48 beta-thymidine kinase X14112 7136 Human herpes simplex virus type 1 35 (+) gtcaacagcgtgccgcaga 0.811 15 3100 2.48 beta-thymidine kinase X14112 7136 Human herpes simplex virus type 1 55 (+) cttggtggcgtgaaactcc 0.857 15 3100 2.48 [DL/R] V01555 7138 Human herpesvirus 4 (Epstein-Barr virus) -2525 (+) acgaagagcgtgaagcacc 0.816 3 3100 0.50 [DL/R] V01555 7138 Human herpesvirus 4 (Epstein-Barr virus) -781 (-) ccctccagcgtggtggctg 0.796 3 3100 0.50 [DL/R] V01555 7138 Human herpesvirus 4 (Epstein-Barr virus) -671 (-) gcaccccgcgtgccttact 0.856 3 3100 0.50 R1 V01555 7139 Human herpesvirus 4 (Epstein-Barr virus) -2823 (+) ccttgaagcgtgggggggt 0.829 9 3100 1.49 R1 V01555 7139 Human herpesvirus 4 (Epstein-Barr virus) -2794 (+) ctcatccgcgtgccagcgc 0.869 9 3100 1.49 R1 V01555 7139 Human herpesvirus 4 (Epstein-Barr virus) -2655 (-) agcatgtgcgtgtccagca 0.875 9 3100 1.49 R1 V01555 7139 Human herpesvirus 4 (Epstein-Barr virus) -2482 (+) gcactgtgcgtgggccaaa 0.872 9 3100 1.49 R1 V01555 7139 Human herpesvirus 4 (Epstein-Barr virus) -2071 (-) ccgcgtggcgtggctgcgt 0.838 9 3100 1.49 R1 V01555 7139 Human herpesvirus 4 (Epstein-Barr virus) -2066 (-) agaggccgcgtggcgtggc 0.800 9 3100 1.49 R1 V01555 7139 Human herpesvirus 4 (Epstein-Barr virus) -2001 (+) acgaggggcgtgagcgagc 0.843 9 3100 1.49 R1 V01555 7139 Human herpesvirus 4 (Epstein-Barr virus) -1938 (+) gtgagcggcgtgaggccgc 0.825 9 3100 1.49 R1 V01555 7139 Human herpesvirus 4 (Epstein-Barr virus) -360 (+) ggacgcagcgtggagttgt 0.768 9 3100 1.49 R2 V01555 7140 Human herpesvirus 4 (Epstein-Barr virus) -2840 (+) gcactgtgcgtgggccaaa 0.872 8 3100 1.32 R2 V01555 7140 Human herpesvirus 4 (Epstein-Barr virus) -2429 (-) ccgcgtggcgtggctgcgt 0.838 8 3100 1.32 R2 V01555 7140 Human herpesvirus 4 (Epstein-Barr virus) -2424 (-) agaggccgcgtggcgtggc 0.800 8 3100 1.32 R2 V01555 7140 Human herpesvirus 4 (Epstein-Barr virus) -2359 (+) acgaggggcgtgagcgagc 0.843 8 3100 1.32 R2 V01555 7140 Human herpesvirus 4 (Epstein-Barr virus) -2296 (+) gtgagcggcgtgaggccgc 0.825 8 3100 1.32 R2 V01555 7140 Human herpesvirus 4 (Epstein-Barr virus) -718 (+) ggacgcagcgtggagttgt 0.768 8 3100 1.32 R2 V01555 7140 Human herpesvirus 4 (Epstein-Barr virus) -67 (-) gtcagcagcgtgttcacaa 0.780 8 3100 1.32 R2 V01555 7140 Human herpesvirus 4 (Epstein-Barr virus) 31 (-) tgactttgcgtggagctga 0.830 8 3100 1.32 L2 V01555 7141 Human herpesvirus 4 (Epstein-Barr virus) -1597 (-) aagggtagcgtgacatcca 0.872 1 3100 0.17 L2 V01555 7142 Human herpesvirus 4 (Epstein-Barr virus) -1996 (-) ctcgtttgcgtgctgaggc 0.915 4 3100 0.66 L2 V01555 7142 Human herpesvirus 4 (Epstein-Barr virus) -1975 (-) tgtccgtgcgtgaccgtct 0.892 4 3100 0.66 L2 V01555 7142 Human herpesvirus 4 (Epstein-Barr virus) -1676 (-) gcgagtggcgtgtgcacca 0.847 4 3100 0.66 L2 V01555 7142 Human herpesvirus 4 (Epstein-Barr virus) -1000 (-) ctgaccagcgtgtttcatt 0.775 4 3100 0.66 L3 V01555 7143 Human herpesvirus 4 (Epstein-Barr virus) -1431 (-) tgggggggcgtgcctttgg 0.815 3 3100 0.50 L3 V01555 7143 Human herpesvirus 4 (Epstein-Barr virus) -466 (+) tgactttgcgtggagctga 0.830 3 3100 0.50 L3 V01555 7143 Human herpesvirus 4 (Epstein-Barr virus) -368 (+) gtcagcagcgtgttcacaa 0.780 3 3100 0.50 2.1 kb V01555 7144 Human herpesvirus 4 (Epstein-Barr virus) 14 (+) acatcatgcgtgctgttgg 0.852 1 3100 0.17 1.3 kb V01555 7145 Human herpesvirus 4 (Epstein-Barr virus) -679 (+) acatcatgcgtgctgttgg 0.852 1 3100 0.17 L1 V01555 7146 Human herpesvirus 4 (Epstein-Barr virus) -548 (+) caccgctgcgtgtcagaaa 0.886 5 3100 0.83 L1 V01555 7146 Human herpesvirus 4 (Epstein-Barr virus) -520 (+) cggagaggcgtggtacaga 0.800 5 3100 0.83 L1 V01555 7146 Human herpesvirus 4 (Epstein-Barr virus) -271 (-) ttctgccgcgtggtcccgc 0.764 5 3100 0.83 L1 V01555 7146 Human herpesvirus 4 (Epstein-Barr virus) -132 (+) gtgggcagcgtggtcaggg 0.802 5 3100 0.83 L1 V01555 7146 Human herpesvirus 4 (Epstein-Barr virus) 36 (-) cttttacgcgtgtcgggct 0.819 5 3100 0.83 L1 V01555 7147 Human herpesvirus 4 (Epstein-Barr virus) -2923 (+) cctgaaggcgtgcggccag 0.856 11 3100 1.82 L1 V01555 7147 Human herpesvirus 4 (Epstein-Barr virus) -2828 (-) accgcccgcgtgcccagta 0.866 11 3100 1.82 L1 V01555 7147 Human herpesvirus 4 (Epstein-Barr virus) -2708 (-) actggcagcgtgacaaccg 0.873 11 3100 1.82 L1 V01555 7147 Human herpesvirus 4 (Epstein-Barr virus) -2616 (+) ggccggggcgtggacagga 0.811 11 3100 1.82 L1 V01555 7147 Human herpesvirus 4 (Epstein-Barr virus) -2181 (+) tttatcagcgtggccgagc 0.782 11 3100 1.82 L1 V01555 7147 Human herpesvirus 4 (Epstein-Barr virus) -1978 (+) gagctgagcgtgtgcaccc 0.837 11 3100 1.82 L1 V01555 7147 Human herpesvirus 4 (Epstein-Barr virus) -1645 (+) atcaatagcgtgttttatt 0.757 11 3100 1.82 L1 V01555 7147 Human herpesvirus 4 (Epstein-Barr virus) -885 (-) ttgagccgcgtgtacagct 0.804 11 3100 1.82 L1 V01555 7147 Human herpesvirus 4 (Epstein-Barr virus) -470 (-) cgtcagcgcgtgcaggtgc 0.825 11 3100 1.82 L1 V01555 7147 Human herpesvirus 4 (Epstein-Barr virus) 30 (+) gtgctaagcgtggtcgtgc 0.765 11 3100 1.82 L1 V01555 7147 Human herpesvirus 4 (Epstein-Barr virus) 56 (+) cgccctggcgtgccgtctc 0.865 11 3100 1.82 L1 V01555 7148 Human herpesvirus 4 (Epstein-Barr virus) -2647 (-) cagccaagcgtgaccaagg 0.870 22 3100 3.63 L1 V01555 7148 Human herpesvirus 4 (Epstein-Barr virus) -2580 (-) caatggagcgtgacgaagg 0.856 22 3100 3.63 L1 V01555 7148 Human herpesvirus 4 (Epstein-Barr virus) -2476 (+) tccaacggcgtgcaggctc 0.809 22 3100 3.63 L1 V01555 7148 Human herpesvirus 4 (Epstein-Barr virus) -2398 (-) cagccatgcgtgaccgtga 0.899 22 3100 3.63 L1 V01555 7148 Human herpesvirus 4 (Epstein-Barr virus) -2232 (-) ggagggggcgtggccttcc 0.799 22 3100 3.63 L1 V01555 7148 Human herpesvirus 4 (Epstein-Barr virus) -2109 (-) cagccaagcgtgaccaagg 0.870 22 3100 3.63 L1 V01555 7148 Human herpesvirus 4 (Epstein-Barr virus) -2042 (-) caatggagcgtgacgaagg 0.856 22 3100 3.63 L1 V01555 7148 Human herpesvirus 4 (Epstein-Barr virus) -1938 (+) tccaacggcgtgcaggctc 0.809 22 3100 3.63 L1 V01555 7148 Human herpesvirus 4 (Epstein-Barr virus) -1860 (-) cagccatgcgtgaccgtga 0.899 22 3100 3.63 L1 V01555 7148 Human herpesvirus 4 (Epstein-Barr virus) -1694 (-) ggagggggcgtggccttcc 0.799 22 3100 3.63 L1 V01555 7148 Human herpesvirus 4 (Epstein-Barr virus) -1586 (-) cagccaagcgtgaccaagg 0.870 22 3100 3.63 L1 V01555 7148 Human herpesvirus 4 (Epstein-Barr virus) -1519 (-) caatggagcgtgacgaagg 0.856 22 3100 3.63 L1 V01555 7148 Human herpesvirus 4 (Epstein-Barr virus) -1415 (+) tccaacggcgtgcaggctc 0.809 22 3100 3.63 L1 V01555 7148 Human herpesvirus 4 (Epstein-Barr virus) -1337 (-) cagccatgcgtgaccgtga 0.899 22 3100 3.63 L1 V01555 7148 Human herpesvirus 4 (Epstein-Barr virus) -1171 (-) ggagggggcgtggccttcc 0.799 22 3100 3.63 L1 V01555 7148 Human herpesvirus 4 (Epstein-Barr virus) -1048 (-) cagccaagcgtgaccaagg 0.870 22 3100 3.63 L1 V01555 7148 Human herpesvirus 4 (Epstein-Barr virus) -981 (-) caatggagcgtgacgaagg 0.856 22 3100 3.63 L1 V01555 7148 Human herpesvirus 4 (Epstein-Barr virus) -877 (+) tccaacggcgtgcaggctc 0.809 22 3100 3.63 L1 V01555 7148 Human herpesvirus 4 (Epstein-Barr virus) -799 (-) cagccatgcgtgaccgtga 0.899 22 3100 3.63 L1 V01555 7148 Human herpesvirus 4 (Epstein-Barr virus) -633 (-) ggagggggcgtggccttcc 0.799 22 3100 3.63 L1 V01555 7148 Human herpesvirus 4 (Epstein-Barr virus) -187 (-) gtagaaagcgtgtgtttgt 0.767 22 3100 3.63 L1 V01555 7148 Human herpesvirus 4 (Epstein-Barr virus) -65 (-) gagtaacgcgtgtttcttg 0.760 22 3100 3.63 Adenovirus early Ia region J01917 7149 Human adenovirus type 2 -428 (+) gcgcggggcgtgggaacgg 0.848 1 598 0.86 Adenovirus early Ib region J01917 7150 Human adenovirus type 2 -1630 (+) gcgcggggcgtgggaacgg 0.848 3 1800 0.85 Adenovirus early Ib region J01917 7150 Human adenovirus type 2 -147 (+) tgtgattgcgtgtgtggtt 0.873 3 1800 0.85 Adenovirus early Ib region J01917 7150 Human adenovirus type 2 -67 (+) ttgcatggcgtgttaaatg 0.800 3 1800 0.85 Adenovirus early Ib region (transactivating element) X03000 7151 Human adenovirus type 7 -1356 (-) tcagtaagcgtgggaaaac 0.833 1 1677 0.31 Adenovirus early II region V00004 7152 Human adenovirus type 12 -1440 (+) ggctttggcgtgcttgtaa 0.825 3 1627 0.94 Adenovirus early II region V00004 7152 Human adenovirus type 12 -1400 (+) gggcgcggcgtgggagccg 0.839 3 1627 0.94 Adenovirus early II region V00004 7152 Human adenovirus type 12 -53 (+) tgtttgggcgtggttaaac 0.776 3 1627 0.94 Adenovirus early II region J01917 7153 Human adenovirus type 2 -2748 (-) tttctgtgcgtgctctaca 0.855 4 3100 0.66 Adenovirus early II region J01917 7153 Human adenovirus type 2 -1677 (+) caaacgtgcgtgcagcagg 0.898 4 3100 0.66 Adenovirus early II region J01917 7153 Human adenovirus type 2 -151 (+) atgtagggcgtgggaattt 0.795 4 3100 0.66 Adenovirus early II region J01917 7153 Human adenovirus type 2 14 (+) tcttccagcgtgcgccgaa 0.862 4 3100 0.66 Adenovirus early III region J01917 7154 Human adenovirus type 2 -2295 (-) cccttgagcgtggaatgaa 0.836 6 3100 0.99 Adenovirus early III region J01917 7154 Human adenovirus type 2 -2212 (+) gccatgggcgtgtggcagc 0.805 6 3100 0.99 Adenovirus early III region J01917 7154 Human adenovirus type 2 -1619 (-) ctcgtgggcgtggtagtcc 0.800 6 3100 0.99 Adenovirus early III region J01917 7154 Human adenovirus type 2 -912 (+) catcacggcgtggccttcc 0.801 6 3100 0.99 Adenovirus early III region J01917 7154 Human adenovirus type 2 -550 (-) tcttccagcgtgcgccgaa 0.862 6 3100 0.99 Adenovirus early III region J01917 7154 Human adenovirus type 2 -385 (-) atgtagggcgtgggaattt 0.795 6 3100 0.99 Adenovirus early IV region J01917 7155 Human adenovirus type 2 -257 (+) gcgcggggcgtgggaacgg 0.848 2 427 2.40 Adenovirus early IV region J01917 7155 Human adenovirus type 2 -95 (+) taggttcgcgtgcggtttt 0.843 2 427 2.40 Adenovirus early IV region J01917 7156 Human adenovirus type 2 -2927 (-) cgcctctgcgtgaagacga 0.888 5 3100 0.83 Adenovirus early IV region J01917 7156 Human adenovirus type 2 -2458 (+) tcgcgcggcgtggtggtcc 0.766 5 3100 0.83 Adenovirus early IV region J01917 7156 Human adenovirus type 2 -1633 (-) taaagttgcgtgtgatgcg 0.909 5 3100 0.83 Adenovirus early IV region J01917 7156 Human adenovirus type 2 -1155 (+) ccttcgtgcgtgacgcggt 0.925 5 3100 0.83 Adenovirus early IV region J01917 7156 Human adenovirus type 2 -592 (+) ggttggcgcgtgcacctgg 0.828 5 3100 0.83 intermediate IX promoter J01917 7157 Human adenovirus type 2 -2022 (+) tgtgattgcgtgtgtggtt 0.873 4 3100 0.66 intermediate IX promoter J01917 7157 Human adenovirus type 2 -1942 (+) ttgcatggcgtgttaaatg 0.800 4 3100 0.66 intermediate IX promoter J01917 7157 Human adenovirus type 2 -557 (+) gtgaaaagcgtggctgtga 0.762 4 3100 0.66 intermediate IX promoter J01917 7157 Human adenovirus type 2 -61 (+) tgtgtgggcgtggcttaag 0.788 4 3100 0.66 intermediate IX promoter X03000 7158 Human adenovirus type 7 -440 (-) atttcttgcgtgcatgtga 0.863 2 3100 0.33 intermediate IX promoter X03000 7158 Human adenovirus type 7 -173 (+) ccggtgtgcgtggatgtga 0.844 2 3100 0.33 Major late promoter J01917 7159 Human adenovirus type 2 -2525 (+) tgtgtgggcgtggcttaag 0.788 6 3100 0.99 Major late promoter J01917 7159 Human adenovirus type 2 -1754 (+) gcgctgggcgtggtgccta 0.778 6 3100 0.99 Major late promoter J01917 7159 Human adenovirus type 2 -1508 (+) aggaaatgcgtggaagaac 0.848 6 3100 0.99 Major late promoter J01917 7159 Human adenovirus type 2 -1259 (-) actcaaagcgtgggaaatg 0.817 6 3100 0.99 Major late promoter J01917 7159 Human adenovirus type 2 -573 (+) ctccgcggcgtggcccttg 0.786 6 3100 0.99 Major late promoter J01917 7159 Human adenovirus type 2 -326 (-) tcaccgagcgtggacaccg 0.815 6 3100 0.99 late LIIa promoter J01917 7160 Human adenovirus type 2 -2815 (+) caaacgtgcgtgcagcagg 0.898 5 3100 0.83 late LIIa promoter J01917 7160 Human adenovirus type 2 -1289 (+) atgtagggcgtgggaattt 0.795 5 3100 0.83 late LIIa promoter J01917 7160 Human adenovirus type 2 -1124 (+) tcttccagcgtgcgccgaa 0.862 5 3100 0.83 late LIIa promoter J01917 7160 Human adenovirus type 2 -762 (-) catcacggcgtggccttcc 0.801 5 3100 0.83 late LIIa promoter J01917 7160 Human adenovirus type 2 -55 (+) ctcgtgggcgtggtagtcc 0.800 5 3100 0.83 [+.40] major mRNA J01901 7161 Adeno-associated virus 2 -1614 (-) atacccagcgtgaccacat 0.842 4 1953 1.05 [+.40] major mRNA J01901 7161 Adeno-associated virus 2 -1587 (-) agaccctgcgtgctcactc 0.882 4 1953 1.05 [+.40] major mRNA J01901 7161 Adeno-associated virus 2 -1038 (+) ccagtgggcgtggactaat 0.812 4 1953 1.05 [+.40] major mRNA J01901 7161 Adeno-associated virus 2 -341 (+) aaggtgcgcgtggaccaga 0.787 4 1953 1.05 "[+.06], major coat protein A'" J01901 7162 Adeno-associated virus 2 -48 (-) atacccagcgtgaccacat 0.842 2 387 2.65 "[+.06], major coat protein A'" J01901 7162 Adeno-associated virus 2 -21 (-) agaccctgcgtgctcactc 0.882 2 387 2.65 "[+.19], major coat protein Aa" J01901 7163 Adeno-associated virus 2 -634 (-) atacccagcgtgaccacat 0.842 3 973 1.58 "[+.19], major coat protein Aa" J01901 7163 Adeno-associated virus 2 -607 (-) agaccctgcgtgctcactc 0.882 3 973 1.58 "[+.19], major coat protein Aa" J01901 7163 Adeno-associated virus 2 -58 (+) ccagtgggcgtggactaat 0.812 3 973 1.58 Large/small t-antigen early V01380 7164 Simian virus 40 -1077 (-) ctttttggcgtgtaataca 0.820 2 3100 0.33 Large/small t-antigen early V01380 7164 Simian virus 40 -375 (+) aggcctggcgtgacagccg 0.888 2 3100 0.33 Large/small t-antigen late V01380 7166 Simian virus 40 -1036 (-) ctttttggcgtgtaataca 0.820 2 3100 0.33 Large/small t-antigen late V01380 7166 Simian virus 40 -334 (+) aggcctggcgtgacagccg 0.888 2 3100 0.33 late V01380 7168 Simian virus 40 22 (-) aggcctggcgtgacagccg 0.888 1 3100 0.17 Immediate early gene-I X17403 11174 Human cytomegalovirus -2987 (+) ctgggacgcgtgctctcgc 0.825 11 3100 1.82 Immediate early gene-I X17403 11174 Human cytomegalovirus -2648 (-) gctccgggcgtgtggcgcc 0.834 11 3100 1.82 Immediate early gene-I X17403 11174 Human cytomegalovirus -2626 (+) gagttcagcgtgcggctct 0.842 11 3100 1.82 Immediate early gene-I X17403 11174 Human cytomegalovirus -2165 (+) cagatcagcgtggaagacg 0.832 11 3100 1.82 Immediate early gene-I X17403 11174 Human cytomegalovirus -2086 (-) tgataacgcgtgccatcgt 0.847 11 3100 1.82 Immediate early gene-I X17403 11174 Human cytomegalovirus -2024 (+) gactacagcgtgtcttttc 0.771 11 3100 1.82 Immediate early gene-I X17403 11174 Human cytomegalovirus -1838 (+) cacagccgcgtgccgcggg 0.867 11 3100 1.82 Immediate early gene-I X17403 11174 Human cytomegalovirus -1523 (-) cgacctggcgtgtcaatga 0.850 11 3100 1.82 Immediate early gene-I X17403 11174 Human cytomegalovirus -196 (+) tcaatgggcgtggatagcg 0.811 11 3100 1.82 Immediate early gene-I X17403 11174 Human cytomegalovirus -55 (+) gcggtaggcgtgtacggtg 0.814 11 3100 1.82 Immediate early gene-I X17403 11174 Human cytomegalovirus 16 (-) caaaacagcgtggatggcg 0.814 11 3100 1.82 Immediate early gene-III X01624 11175 Human herpes simplex virus type 2 -220 (+) ccctaccgcgtgcttccga 0.825 4 487 4.21 Immediate early gene-III X01624 11175 Human herpes simplex virus type 2 -201 (-) cgtacacgcgtgggcgggg 0.843 4 487 4.21 Immediate early gene-III X01624 11175 Human herpes simplex virus type 2 -198 (+) cgcccacgcgtgtacgcga 0.806 4 487 4.21 Immediate early gene-III X01624 11175 Human herpes simplex virus type 2 70 (-) agggggcgcgtgtcggaag 0.800 4 487 4.21 Immediate early gene-III X00416 11176 Human herpes simplex virus type 2 67 (-) ggtgcgtgcgtgtgcctgt 0.863 2 879 1.16 Immediate early gene-III X00416 11176 Human herpes simplex virus type 2 71 (-) gtgcggtgcgtgcgtgtgc 0.878 2 879 1.16 Immediate early gene-IV/V X00416 11177 Human herpes simplex virus type 2 -844 (+) gtgcggtgcgtgcgtgtgc 0.878 2 1100 0.93 X00416 11177 Human herpes simplex virus type 2 -840 (+) ggtgcgtgcgtgtgcctgt 0.863 2 1100 0.93 beta 82K alkaline exonuclease X14112 11178 Human herpes simplex virus type 1 -2767 (-) cggtgtcgcgtgtcgcgca 0.846 13 3100 2.15 beta 82K alkaline exonuclease X14112 11178 Human herpes simplex virus type 1 -2289 (-) gtcgcacgcgtgtcgtttt 0.773 13 3100 2.15 beta 82K alkaline exonuclease X14112 11178 Human herpes simplex virus type 1 -2286 (+) acgacacgcgtgcgaccgt 0.873 13 3100 2.15 beta 82K alkaline exonuclease X14112 11178 Human herpes simplex virus type 1 -1951 (+) tcggcgagcgtgtcgtcga 0.794 13 3100 2.15 beta 82K alkaline exonuclease X14112 11178 Human herpes simplex virus type 1 -1475 (+) gcccgaggcgtgggcctct 0.806 13 3100 2.15 beta 82K alkaline exonuclease X14112 11178 Human herpes simplex virus type 1 -1447 (+) tggtcttgcgtgacgagag 0.932 13 3100 2.15 beta 82K alkaline exonuclease X14112 11178 Human herpes simplex virus type 1 -1395 (-) aagcccagcgtgcgatact 0.869 13 3100 2.15 beta 82K alkaline exonuclease X14112 11178 Human herpes simplex virus type 1 -1081 (+) aagcgccgcgtgtcggcgc 0.796 13 3100 2.15 beta 82K alkaline exonuclease X14112 11178 Human herpes simplex virus type 1 -1041 (-) cgctactgcgtgggccgcg 0.889 13 3100 2.15 beta 82K alkaline exonuclease X14112 11178 Human herpes simplex virus type 1 -832 (+) tggttttgcgtggccgcct 0.884 13 3100 2.15 beta 82K alkaline exonuclease X14112 11178 Human herpes simplex virus type 1 -500 (+) gtcgcgggcgtgggtgccc 0.806 13 3100 2.15 beta 82K alkaline exonuclease X14112 11178 Human herpes simplex virus type 1 -395 (+) gtcggtggcgtgctgatca 0.822 13 3100 2.15 beta 82K alkaline exonuclease X14112 11178 Human herpes simplex virus type 1 -97 (+) cgacagcgcgtgccgcgcg 0.873 13 3100 2.15 beta 42K X14112 11179 Human herpes simplex virus type 1 -2679 (+) ccatcgtgcgtgtatgcgt 0.865 13 3100 2.15 beta 42K X14112 11179 Human herpes simplex virus type 1 -2322 (-) tcatcgagcgtgatggggg 0.833 13 3100 2.15 beta 42K X14112 11179 Human herpes simplex virus type 1 -2246 (-) catgcaggcgtggtacgtg 0.829 13 3100 2.15 beta 42K X14112 11179 Human herpes simplex virus type 1 -1905 (-) gggggcggcgtgtgggggt 0.820 13 3100 2.15 beta 42K X14112 11179 Human herpes simplex virus type 1 -1822 (+) tgtccccgcgtgtccgttc 0.790 13 3100 2.15 beta 42K X14112 11179 Human herpes simplex virus type 1 -1734 (+) aataaatgcgtgttttcat 0.813 13 3100 2.15 beta 42K X14112 11179 Human herpes simplex virus type 1 -1212 (+) ggcgtccgcgtggagcatg 0.784 13 3100 2.15 beta 42K X14112 11179 Human herpes simplex virus type 1 -994 (-) gccccaagcgtgactacgg 0.854 13 3100 2.15 beta 42K X14112 11179 Human herpes simplex virus type 1 -711 (+) cgcgggggcgtgaataatc 0.833 13 3100 2.15 beta 42K X14112 11179 Human herpes simplex virus type 1 -242 (+) tcgatgggcgtgtgtatta 0.785 13 3100 2.15 beta 42K X14112 11179 Human herpes simplex virus type 1 -186 (-) ggttcaggcgtgcccggca 0.865 13 3100 2.15 beta 42K X14112 11179 Human herpes simplex virus type 1 -95 (+) gtttggggcgtgtctgttt 0.771 13 3100 2.15 beta 42K X14112 11179 Human herpes simplex virus type 1 5 (-) tggggatgcgtgagtggcc 0.902 13 3100 2.15 beta 39K dUTPase X14112 11180 Human herpes simplex virus type 1 -2960 (+) agtctgcgcgtgtgtcccg 0.805 13 3100 2.15 beta 39K dUTPase X14112 11180 Human herpes simplex virus type 1 -2826 (+) gctgtacgcgtgttcccgc 0.796 13 3100 2.15 beta 39K dUTPase X14112 11180 Human herpes simplex virus type 1 -2411 (-) gtctggcgcgtgttttgtt 0.775 13 3100 2.15 beta 39K dUTPase X14112 11180 Human herpes simplex virus type 1 -2214 (+) tagctcggcgtggaagaaa 0.801 13 3100 2.15 beta 39K dUTPase X14112 11180 Human herpes simplex virus type 1 -1541 (-) cttaaatgcgtggtggcga 0.815 13 3100 2.15 beta 39K dUTPase X14112 11180 Human herpes simplex virus type 1 -1393 (-) tggcgttgcgtgcctttgt 0.887 13 3100 2.15 beta 39K dUTPase X14112 11180 Human herpes simplex virus type 1 -1155 (-) accatccgcgtgacggtct 0.829 13 3100 2.15 beta 39K dUTPase X14112 11180 Human herpes simplex virus type 1 -570 (+) ggcgcgagcgtgtctgtag 0.802 13 3100 2.15 beta 39K dUTPase X14112 11180 Human herpes simplex virus type 1 -415 (-) gaccctagcgtgttcgtgg 0.807 13 3100 2.15 beta 39K dUTPase X14112 11180 Human herpes simplex virus type 1 -287 (+) tggggatgcgtgagtggcc 0.902 13 3100 2.15 beta 39K dUTPase X14112 11180 Human herpes simplex virus type 1 -187 (-) gtttggggcgtgtctgttt 0.771 13 3100 2.15 beta 39K dUTPase X14112 11180 Human herpes simplex virus type 1 -96 (+) ggttcaggcgtgcccggca 0.865 13 3100 2.15 beta 39K dUTPase X14112 11180 Human herpes simplex virus type 1 -40 (-) tcgatgggcgtgtgtatta 0.785 13 3100 2.15 beta-Ribonucleotide reductase small subunit X00416 11181 Human herpes simplex virus type 2 -39 (-) cttatatgcgtggacgaga 0.835 1 347 1.48 beta-DNA binding protein X14112 11182 Human herpes simplex virus type 1 -2701 (+) agggagagcgtgctgaagc 0.814 16 3100 2.64 beta-DNA binding protein X14112 11182 Human herpes simplex virus type 1 -1998 (-) gtgtttcgcgtgtgggaca 0.816 16 3100 2.64 beta-DNA binding protein X14112 11182 Human herpes simplex virus type 1 -1989 (-) ggccggggcgtgtttcgcg 0.799 16 3100 2.64 beta-DNA binding protein X14112 11182 Human herpes simplex virus type 1 -1798 (+) accacgggcgtgggcaggc 0.833 16 3100 2.64 beta-DNA binding protein X14112 11182 Human herpes simplex virus type 1 -1471 (+) tgggctagcgtgttgttcc 0.784 16 3100 2.64 beta-DNA binding protein X14112 11182 Human herpes simplex virus type 1 -1327 (-) gaagcgggcgtgtgctgtc 0.829 16 3100 2.64 beta-DNA binding protein X14112 11182 Human herpes simplex virus type 1 -1099 (+) tactgccgcgtgccgtaaa 0.821 16 3100 2.64 beta-DNA binding protein X14112 11182 Human herpes simplex virus type 1 -1045 (+) cccaggagcgtgatgacgg 0.840 16 3100 2.64 beta-DNA binding protein X14112 11182 Human herpes simplex virus type 1 -1001 (+) aaaccgcgcgtggaactgg 0.803 16 3100 2.64 beta-DNA binding protein X14112 11182 Human herpes simplex virus type 1 -971 (+) gccgtacgcgtgctccacg 0.842 16 3100 2.64 beta-DNA binding protein X14112 11182 Human herpes simplex virus type 1 -902 (+) cgccggggcgtggtccacg 0.801 16 3100 2.64 beta-DNA binding protein X14112 11182 Human herpes simplex virus type 1 -894 (-) tggggcggcgtggaccacg 0.787 16 3100 2.64 beta-DNA binding protein X14112 11182 Human herpes simplex virus type 1 -227 (+) ccggtgggcgtggccgcta 0.822 16 3100 2.64 beta-DNA binding protein X14112 11182 Human herpes simplex virus type 1 -106 (-) ccggtgggcgtggccgcta 0.822 16 3100 2.64 beta-DNA binding protein X14112 11182 Human herpes simplex virus type 1 -79 (+) gcgcggggcgtgggagggg 0.855 16 3100 2.64 beta-DNA binding protein X14112 11182 Human herpes simplex virus type 1 -53 (-) cctgggggcgtgccggtcc 0.851 16 3100 2.64 beta-Glycoprotein D X14112 11183 Human herpes simplex virus type 1 -2996 (+) cgaggacgcgtgcctggac 0.871 7 3100 1.16 beta-Glycoprotein D X14112 11183 Human herpes simplex virus type 1 -2144 (+) tggcgccgcgtgcttcgtg 0.822 7 3100 1.16 beta-Glycoprotein D X14112 11183 Human herpes simplex virus type 1 -1583 (+) gcgccatgcgtgccgttgt 0.888 7 3100 1.16 beta-Glycoprotein D X14112 11183 Human herpes simplex virus type 1 -1406 (-) tggtcgggcgtggtaaggc 0.823 7 3100 1.16 beta-Glycoprotein D X14112 11183 Human herpes simplex virus type 1 -921 (+) caccctagcgtgcgttacg 0.882 7 3100 1.16 beta-Glycoprotein D X14112 11183 Human herpes simplex virus type 1 -505 (-) cactggggcgtgcgttaag 0.852 7 3100 1.16 beta-Glycoprotein D X14112 11183 Human herpes simplex virus type 1 -310 (+) cttctccgcgtgggtgatg 0.800 7 3100 1.16 beta-gamma 2.1 kb X14112 11184 Human herpes simplex virus type 1 -2990 (+) agctccagcgtgccgtacg 0.831 12 3100 1.98 beta-gamma 2.1 kb X14112 11184 Human herpes simplex virus type 1 -2678 (-) taaaggggcgtgatttcgg 0.802 12 3100 1.98 beta-gamma 2.1 kb X14112 11184 Human herpes simplex virus type 1 -2333 (-) tagtctcgcgtgcccaagg 0.879 12 3100 1.98 beta-gamma 2.1 kb X14112 11184 Human herpes simplex virus type 1 -2267 (-) cagggccgcgtgggcggca 0.846 12 3100 1.98 beta-gamma 2.1 kb X14112 11184 Human herpes simplex virus type 1 -2047 (+) aaaattcgcgtggaggagc 0.799 12 3100 1.98 beta-gamma 2.1 kb X14112 11184 Human herpes simplex virus type 1 -1808 (-) accgttggcgtgcaccttg 0.835 12 3100 1.98 beta-gamma 2.1 kb X14112 11184 Human herpes simplex virus type 1 -1495 (-) cggatgcgcgtgagggtga 0.840 12 3100 1.98 beta-gamma 2.1 kb X14112 11184 Human herpes simplex virus type 1 -686 (+) gtggttagcgtgtacgtcg 0.805 12 3100 1.98 beta-gamma 2.1 kb X14112 11184 Human herpes simplex virus type 1 -575 (+) tatcgctgcgtgctgcacc 0.864 12 3100 1.98 beta-gamma 2.1 kb X14112 11184 Human herpes simplex virus type 1 -330 (-) cgacagcgcgtgccgcgcg 0.873 12 3100 1.98 beta-gamma 2.1 kb X14112 11184 Human herpes simplex virus type 1 -32 (-) gtcggtggcgtgctgatca 0.822 12 3100 1.98 beta-gamma 2.1 kb X14112 11184 Human herpes simplex virus type 1 73 (-) gtcgcgggcgtgggtgccc 0.806 12 3100 1.98 beta-gamma-alpha-Trans-inducing factor/ Virion stimulatory protein X14112 11185 Human herpes simplex virus type 1 -2500 (+) ggcgtccgcgtggagcatg 0.784 12 3100 1.98 beta-gamma-alpha-Trans-inducing factor/ Virion stimulatory protein X14112 11185 Human herpes simplex virus type 1 -2282 (-) gccccaagcgtgactacgg 0.854 12 3100 1.98 beta-gamma-alpha-Trans-inducing factor/ Virion stimulatory protein X14112 11185 Human herpes simplex virus type 1 -1999 (+) cgcgggggcgtgaataatc 0.833 12 3100 1.98 beta-gamma-alpha-Trans-inducing factor/ Virion stimulatory protein X14112 11185 Human herpes simplex virus type 1 -1530 (+) tcgatgggcgtgtgtatta 0.785 12 3100 1.98 beta-gamma-alpha-Trans-inducing factor/ Virion stimulatory protein X14112 11185 Human herpes simplex virus type 1 -1474 (-) ggttcaggcgtgcccggca 0.865 12 3100 1.98 beta-gamma-alpha-Trans-inducing factor/ Virion stimulatory protein X14112 11185 Human herpes simplex virus type 1 -1383 (+) gtttggggcgtgtctgttt 0.771 12 3100 1.98 beta-gamma-alpha-Trans-inducing factor/ Virion stimulatory protein X14112 11185 Human herpes simplex virus type 1 -1283 (-) tggggatgcgtgagtggcc 0.902 12 3100 1.98 beta-gamma-alpha-Trans-inducing factor/ Virion stimulatory protein X14112 11185 Human herpes simplex virus type 1 -1155 (+) gaccctagcgtgttcgtgg 0.807 12 3100 1.98 beta-gamma-alpha-Trans-inducing factor/ Virion stimulatory protein X14112 11185 Human herpes simplex virus type 1 -1000 (-) ggcgcgagcgtgtctgtag 0.802 12 3100 1.98 beta-gamma-alpha-Trans-inducing factor/ Virion stimulatory protein X14112 11185 Human herpes simplex virus type 1 -415 (+) accatccgcgtgacggtct 0.829 12 3100 1.98 beta-gamma-alpha-Trans-inducing factor/ Virion stimulatory protein X14112 11185 Human herpes simplex virus type 1 -177 (+) tggcgttgcgtgcctttgt 0.887 12 3100 1.98 beta-gamma-alpha-Trans-inducing factor/ Virion stimulatory protein X14112 11185 Human herpes simplex virus type 1 -29 (+) cttaaatgcgtggtggcga 0.815 12 3100 1.98 gamma 5 kb X14112 11186 Human herpes simplex virus type 1 -2946 (-) ggcgcgagcgtgtctgtag 0.802 9 3100 1.49 gamma 5 kb X14112 11186 Human herpes simplex virus type 1 -2361 (+) accatccgcgtgacggtct 0.829 9 3100 1.49 gamma 5 kb X14112 11186 Human herpes simplex virus type 1 -2123 (+) tggcgttgcgtgcctttgt 0.887 9 3100 1.49 gamma 5 kb X14112 11186 Human herpes simplex virus type 1 -1975 (+) cttaaatgcgtggtggcga 0.815 9 3100 1.49 gamma 5 kb X14112 11186 Human herpes simplex virus type 1 -1302 (-) tagctcggcgtggaagaaa 0.801 9 3100 1.49 gamma 5 kb X14112 11186 Human herpes simplex virus type 1 -1105 (+) gtctggcgcgtgttttgtt 0.775 9 3100 1.49 gamma 5 kb X14112 11186 Human herpes simplex virus type 1 -690 (-) gctgtacgcgtgttcccgc 0.796 9 3100 1.49 gamma 5 kb X14112 11186 Human herpes simplex virus type 1 -556 (-) agtctgcgcgtgtgtcccg 0.805 9 3100 1.49 gamma 5 kb X14112 11186 Human herpes simplex virus type 1 -116 (+) gttgccggcgtgtgtgtta 0.773 9 3100 1.49 gamma-Glycoprotein C X14112 11187 Human herpes simplex virus type 1 -2736 (+) ctcctgagcgtgtttcgcg 0.800 15 3100 2.48 gamma-Glycoprotein C X14112 11187 Human herpes simplex virus type 1 -2663 (-) tgaaccagcgtgcgaaacg 0.877 15 3100 2.48 gamma-Glycoprotein C X14112 11187 Human herpes simplex virus type 1 -2474 (-) gtggtgggcgtggcactat 0.811 15 3100 2.48 gamma-Glycoprotein C X14112 11187 Human herpes simplex virus type 1 -2385 (+) gaggagggcgtgtcgtcca 0.797 15 3100 2.48 gamma-Glycoprotein C X14112 11187 Human herpes simplex virus type 1 -1907 (-) gtgacccgcgtggtcgacg 0.792 15 3100 2.48 gamma-Glycoprotein C X14112 11187 Human herpes simplex virus type 1 -1699 (+) ccgttacgcgtgttacttt 0.806 15 3100 2.48 gamma-Glycoprotein C X14112 11187 Human herpes simplex virus type 1 -1514 (+) ctttcccgcgtgtcgcgtg 0.814 15 3100 2.48 gamma-Glycoprotein C X14112 11187 Human herpes simplex virus type 1 -1507 (+) gcgtgtcgcgtgtggttca 0.815 15 3100 2.48 gamma-Glycoprotein C X14112 11187 Human herpes simplex virus type 1 -1422 (+) atgtggggcgtgacggaac 0.815 15 3100 2.48 gamma-Glycoprotein C X14112 11187 Human herpes simplex virus type 1 -1404 (+) ccaccccgcgtgccatcac 0.892 15 3100 2.48 gamma-Glycoprotein C X14112 11187 Human herpes simplex virus type 1 -1300 (+) acacctcgcgtgcgtgggg 0.886 15 3100 2.48 gamma-Glycoprotein C X14112 11187 Human herpes simplex virus type 1 -1296 (+) ctcgcgtgcgtgggggccc 0.871 15 3100 2.48 gamma-Glycoprotein C X14112 11187 Human herpes simplex virus type 1 -1247 (-) aaacccagcgtggcggcct 0.806 15 3100 2.48 gamma-Glycoprotein C X14112 11187 Human herpes simplex virus type 1 -1043 (-) cccggctgcgtgccgggct 0.932 15 3100 2.48 gamma-Glycoprotein C X14112 11187 Human herpes simplex virus type 1 -388 (-) cagtccggcgtgaacaaac 0.858 15 3100 2.48 gamma-Glycoprotein C X01996 11188 Human herpes simplex virus type 2 -492 (-) cgccgccgcgtggcccccg 0.828 3 770 1.99 gamma-Glycoprotein C X01996 11188 Human herpes simplex virus type 2 -116 (+) accaccggcgtgtgatgat 0.839 3 770 1.99 gamma-Glycoprotein C X01996 11188 Human herpes simplex virus type 2 -19 (-) tgggcccgcgtgcccccct 0.858 3 770 1.99 gamma 42K X14112 11189 Human herpes simplex virus type 1 -2962 (-) tgcctgcgcgtgtccgacc 0.809 14 3100 2.31 gamma 42K X14112 11189 Human herpes simplex virus type 1 -2819 (+) cagaaccgcgtgatggcgg 0.829 14 3100 2.31 gamma 42K X14112 11189 Human herpes simplex virus type 1 -2763 (+) gcggggggcgtggggaatc 0.813 14 3100 2.31 gamma 42K X14112 11189 Human herpes simplex virus type 1 -2563 (-) gaggtgcgcgtgcttgccg 0.844 14 3100 2.31 gamma 42K X14112 11189 Human herpes simplex virus type 1 -2537 (+) acgtatagcgtggtaaggc 0.837 14 3100 2.31 gamma 42K X14112 11189 Human herpes simplex virus type 1 -2096 (+) ccatcgtgcgtgtatgcgt 0.865 14 3100 2.31 gamma 42K X14112 11189 Human herpes simplex virus type 1 -1739 (-) tcatcgagcgtgatggggg 0.833 14 3100 2.31 gamma 42K X14112 11189 Human herpes simplex virus type 1 -1663 (-) catgcaggcgtggtacgtg 0.829 14 3100 2.31 gamma 42K X14112 11189 Human herpes simplex virus type 1 -1322 (-) gggggcggcgtgtgggggt 0.820 14 3100 2.31 gamma 42K X14112 11189 Human herpes simplex virus type 1 -1239 (+) tgtccccgcgtgtccgttc 0.790 14 3100 2.31 gamma 42K X14112 11189 Human herpes simplex virus type 1 -1151 (+) aataaatgcgtgttttcat 0.813 14 3100 2.31 gamma 42K X14112 11189 Human herpes simplex virus type 1 -629 (+) ggcgtccgcgtggagcatg 0.784 14 3100 2.31 gamma 42K X14112 11189 Human herpes simplex virus type 1 -411 (-) gccccaagcgtgactacgg 0.854 14 3100 2.31 gamma 42K X14112 11189 Human herpes simplex virus type 1 -128 (+) cgcgggggcgtgaataatc 0.833 14 3100 2.31 18K X14112 11190 Human herpes simplex virus type 1 -2824 (-) cccggctgcgtgccgggct 0.932 7 3100 1.16 18K X14112 11190 Human herpes simplex virus type 1 -2169 (-) cagtccggcgtgaacaaac 0.858 7 3100 1.16 18K X14112 11190 Human herpes simplex virus type 1 -1372 (-) cttttgggcgtggaggtgg 0.773 7 3100 1.16 18K X14112 11190 Human herpes simplex virus type 1 -828 (-) catcaccgcgtggggctgg 0.800 7 3100 1.16 18K X14112 11190 Human herpes simplex virus type 1 -703 (-) tgcgtctgcgtgtcgatct 0.845 7 3100 1.16 18K X14112 11190 Human herpes simplex virus type 1 -467 (+) cccgagggcgtgacgtttg 0.827 7 3100 1.16 18K X14112 11190 Human herpes simplex virus type 1 23 (+) acacacggcgtggagcaaa 0.767 7 3100 1.16 18K X01996 11191 Human herpes simplex virus type 2 -2213 (-) cgccgccgcgtggcccccg 0.828 10 2491 2.06 18K X01996 11191 Human herpes simplex virus type 2 -1837 (+) accaccggcgtgtgatgat 0.839 10 2491 2.06 18K X01996 11191 Human herpes simplex virus type 2 -1740 (-) tgggcccgcgtgcccccct 0.858 10 2491 2.06 18K X01996 11191 Human herpes simplex virus type 2 -1400 (-) tgggggggcgtgggtgtgg 0.784 10 2491 2.06 18K X01996 11191 Human herpes simplex virus type 2 -888 (+) cgcgttcgcgtgttccgcc 0.843 10 2491 2.06 18K X01996 11191 Human herpes simplex virus type 2 -853 (-) cagcaccgcgtgggggtgg 0.805 10 2491 2.06 18K X01996 11191 Human herpes simplex virus type 2 -728 (-) tgcgtctgcgtgtgtatct 0.849 10 2491 2.06 18K X01996 11191 Human herpes simplex virus type 2 -172 (-) cgaggaggcgtgggtgagg 0.809 10 2491 2.06 18K X01996 11191 Human herpes simplex virus type 2 22 (-) ccacgcggcgtgcgccgtt 0.878 10 2491 2.06 18K X01996 11191 Human herpes simplex virus type 2 28 (+) gcacgccgcgtgggctcca 0.818 10 2491 2.06 R1 V01555 11192 Human herpesvirus 4 (Epstein-Barr virus) -2404 (-) atggcccgcgtgactttgt 0.807 9 3100 1.49 R1 V01555 11192 Human herpesvirus 4 (Epstein-Barr virus) -2179 (+) ctccgctgcgtggacatga 0.833 9 3100 1.49 R1 V01555 11192 Human herpesvirus 4 (Epstein-Barr virus) -2134 (+) aagaagagcgtgttcaggc 0.799 9 3100 1.49 R1 V01555 11192 Human herpesvirus 4 (Epstein-Barr virus) -1732 (+) aagatctgcgtggacacgt 0.851 9 3100 1.49 R1 V01555 11192 Human herpesvirus 4 (Epstein-Barr virus) -1326 (-) ccagagggcgtgccccagc 0.860 9 3100 1.49 R1 V01555 11192 Human herpesvirus 4 (Epstein-Barr virus) -673 (-) gggtgttgcgtgatgagta 0.901 9 3100 1.49 R1 V01555 11192 Human herpesvirus 4 (Epstein-Barr virus) -364 (+) cgtacgtgcgtgtctttgc 0.850 9 3100 1.49 R1 V01555 11192 Human herpesvirus 4 (Epstein-Barr virus) -155 (-) ggtcgaggcgtgggtcgcg 0.817 9 3100 1.49 R1 V01555 11192 Human herpesvirus 4 (Epstein-Barr virus) -51 (+) aaaatgggcgtggcagaat 0.823 9 3100 1.49 L2 V01555 11193 Human herpesvirus 4 (Epstein-Barr virus) -2896 (+) tccaacggcgtgcaggctc 0.809 6 3100 0.99 L2 V01555 11193 Human herpesvirus 4 (Epstein-Barr virus) -2818 (-) cagccatgcgtgaccgtga 0.899 6 3100 0.99 L2 V01555 11193 Human herpesvirus 4 (Epstein-Barr virus) -2652 (-) ggagggggcgtggccttcc 0.799 6 3100 0.99 L2 V01555 11193 Human herpesvirus 4 (Epstein-Barr virus) -2206 (-) gtagaaagcgtgtgtttgt 0.767 6 3100 0.99 L2 V01555 11193 Human herpesvirus 4 (Epstein-Barr virus) -2084 (-) gagtaacgcgtgtttcttg 0.760 6 3100 0.99 L2 V01555 11193 Human herpesvirus 4 (Epstein-Barr virus) 19 (+) tcctggagcgtgctttgct 0.830 6 3100 0.99 L1A V01555 11194 Human herpesvirus 4 (Epstein-Barr virus) -2996 (-) cagccaagcgtgaccaagg 0.870 22 3100 3.63 L1A V01555 11194 Human herpesvirus 4 (Epstein-Barr virus) -2929 (-) caatggagcgtgacgaagg 0.856 22 3100 3.63 L1A V01555 11194 Human herpesvirus 4 (Epstein-Barr virus) -2825 (+) tccaacggcgtgcaggctc 0.809 22 3100 3.63 L1A V01555 11194 Human herpesvirus 4 (Epstein-Barr virus) -2747 (-) cagccatgcgtgaccgtga 0.899 22 3100 3.63 L1A V01555 11194 Human herpesvirus 4 (Epstein-Barr virus) -2581 (-) ggagggggcgtggccttcc 0.799 22 3100 3.63 L1A V01555 11194 Human herpesvirus 4 (Epstein-Barr virus) -2458 (-) cagccaagcgtgaccaagg 0.870 22 3100 3.63 L1A V01555 11194 Human herpesvirus 4 (Epstein-Barr virus) -2391 (-) caatggagcgtgacgaagg 0.856 22 3100 3.63 L1A V01555 11194 Human herpesvirus 4 (Epstein-Barr virus) -2287 (+) tccaacggcgtgcaggctc 0.809 22 3100 3.63 L1A V01555 11194 Human herpesvirus 4 (Epstein-Barr virus) -2209 (-) cagccatgcgtgaccgtga 0.899 22 3100 3.63 L1A V01555 11194 Human herpesvirus 4 (Epstein-Barr virus) -2043 (-) ggagggggcgtggccttcc 0.799 22 3100 3.63 L1A V01555 11194 Human herpesvirus 4 (Epstein-Barr virus) -1935 (-) cagccaagcgtgaccaagg 0.870 22 3100 3.63 L1A V01555 11194 Human herpesvirus 4 (Epstein-Barr virus) -1868 (-) caatggagcgtgacgaagg 0.856 22 3100 3.63 L1A V01555 11194 Human herpesvirus 4 (Epstein-Barr virus) -1764 (+) tccaacggcgtgcaggctc 0.809 22 3100 3.63 L1A V01555 11194 Human herpesvirus 4 (Epstein-Barr virus) -1686 (-) cagccatgcgtgaccgtga 0.899 22 3100 3.63 L1A V01555 11194 Human herpesvirus 4 (Epstein-Barr virus) -1520 (-) ggagggggcgtggccttcc 0.799 22 3100 3.63 L1A V01555 11194 Human herpesvirus 4 (Epstein-Barr virus) -1397 (-) cagccaagcgtgaccaagg 0.870 22 3100 3.63 L1A V01555 11194 Human herpesvirus 4 (Epstein-Barr virus) -1330 (-) caatggagcgtgacgaagg 0.856 22 3100 3.63 L1A V01555 11194 Human herpesvirus 4 (Epstein-Barr virus) -1226 (+) tccaacggcgtgcaggctc 0.809 22 3100 3.63 L1A V01555 11194 Human herpesvirus 4 (Epstein-Barr virus) -1148 (-) cagccatgcgtgaccgtga 0.899 22 3100 3.63 L1A V01555 11194 Human herpesvirus 4 (Epstein-Barr virus) -982 (-) ggagggggcgtggccttcc 0.799 22 3100 3.63 L1A V01555 11194 Human herpesvirus 4 (Epstein-Barr virus) -536 (-) gtagaaagcgtgtgtttgt 0.767 22 3100 3.63 L1A V01555 11194 Human herpesvirus 4 (Epstein-Barr virus) -414 (-) gagtaacgcgtgtttcttg 0.760 22 3100 3.63 Adenovirus early Ia region X02996 11195 Human adenovirus type 5 -428 (+) gcgcggggcgtgggaacgg 0.848 1 599 0.85 Adenovirus early Ia region X03000 11196 Human adenovirus type 7 -291 (-) tcagtaagcgtgggaaaac 0.833 1 612 0.84 11197 Human adenovirus type 12 -358 (+) ggctttggcgtgcttgtaa 0.825 2 545 1.88 11197 Human adenovirus type 12 -318 (+) gggcgcggcgtgggagccg 0.839 2 545 1.88 Adenovirus early Ib region X02996 11198 Human adenovirus type 5 -1632 (+) gcgcggggcgtgggaacgg 0.848 3 1803 0.85 Adenovirus early Ib region X02996 11198 Human adenovirus type 5 -147 (+) tgtgattgcgtgtgtggtt 0.873 3 1803 0.85 Adenovirus early Ib region X02996 11198 Human adenovirus type 5 -67 (+) ttgcatggcgtgttaaatg 0.800 3 1803 0.85 intermediate IVa2 promoter X02996 11200 Human adenovirus type 5 -2927 (-) cgcctctgcgtgaagacga 0.888 5 3100 0.83 intermediate IVa2 promoter X02996 11200 Human adenovirus type 5 -2458 (+) tcgcgcggcgtggtggtcc 0.766 5 3100 0.83 intermediate IVa2 promoter X02996 11200 Human adenovirus type 5 -1633 (-) taaagttgcgtgtgatgcg 0.909 5 3100 0.83 intermediate IVa2 promoter X02996 11200 Human adenovirus type 5 -1155 (+) ccttcgtgcgtgacgcggt 0.925 5 3100 0.83 intermediate IVa2 promoter X02996 11200 Human adenovirus type 5 -592 (+) ggttggcgcgtgcacctgg 0.828 5 3100 0.83 intermediate IVa2 promoter X03000 11201 Human adenovirus type 7 -2594 (-) ttcgagggcgtgagggagg 0.812 2 3100 0.33 intermediate IVa2 promoter X03000 11201 Human adenovirus type 7 -22 (-) caaaagcgcgtgtccaggc 0.844 2 3100 0.33 intermediate IX promoter X02996 11202 Human adenovirus type 5 -2025 (+) tgtgattgcgtgtgtggtt 0.873 4 3100 0.66 intermediate IX promoter X02996 11202 Human adenovirus type 5 -1945 (+) ttgcatggcgtgttaaatg 0.800 4 3100 0.66 intermediate IX promoter X02996 11202 Human adenovirus type 5 -557 (+) gtgaaaagcgtggctgtga 0.762 4 3100 0.66 intermediate IX promoter X02996 11202 Human adenovirus type 5 -61 (+) tgtgtgggcgtggcttaag 0.788 4 3100 0.66 Major late promoter X02996 11203 Human adenovirus type 5 -2529 (+) tgtgtgggcgtggcttaag 0.788 6 3100 0.99 Major late promoter X02996 11203 Human adenovirus type 5 -1754 (+) gcgctgggcgtggtgccta 0.778 6 3100 0.99 Major late promoter X02996 11203 Human adenovirus type 5 -1508 (+) aggaaatgcgtggaagaac 0.848 6 3100 0.99 Major late promoter X02996 11203 Human adenovirus type 5 -1259 (-) actcaaagcgtgggaaatg 0.817 6 3100 0.99 Major late promoter X02996 11203 Human adenovirus type 5 -573 (+) ctccgcggcgtggcccttg 0.786 6 3100 0.99 Major late promoter X02996 11203 Human adenovirus type 5 -326 (-) tcaccgagcgtggacaccg 0.815 6 3100 0.99 Major late promoter X03000 11204 Human adenovirus type 7 -2884 (-) atttcttgcgtgcatgtga 0.863 6 3100 0.99 Major late promoter X03000 11204 Human adenovirus type 7 -2617 (+) ccggtgtgcgtggatgtga 0.844 6 3100 0.99 Major late promoter X03000 11204 Human adenovirus type 7 -2060 (+) cccagttgcgtgagcaaac 0.946 6 3100 0.99 Major late promoter X03000 11204 Human adenovirus type 7 -573 (+) ctcggccgcgtggcctttg 0.788 6 3100 0.99 Major late promoter X03000 11204 Human adenovirus type 7 -326 (-) tcacccagcgtggacacga 0.798 6 3100 0.99 Major late promoter X03000 11204 Human adenovirus type 7 -208 (+) caaaagcgcgtgtccaggc 0.844 6 3100 0.99 Late promoter (wart) X02346 11205 Bovine papillomavirus type 1 -2486 (-) cagaggggcgtggtatgca 0.827 3 3100 0.50 Late promoter (wart) X02346 11205 Bovine papillomavirus type 1 -2352 (-) ctgcggggcgtgcttgttc 0.803 3 3100 0.50 Late promoter (wart) X02346 11205 Bovine papillomavirus type 1 -18 (+) ttgcagtgcgtgcattgaa 0.862 3 3100 0.50 Late promoter X02346 11206 Bovine papillomavirus type 1 -2420 (-) cagaggggcgtggtatgca 0.827 3 3100 0.50 Late promoter X02346 11206 Bovine papillomavirus type 1 -2286 (-) ctgcggggcgtgcttgttc 0.803 3 3100 0.50 Late promoter X02346 11206 Bovine papillomavirus type 1 48 (+) ttgcagtgcgtgcattgaa 0.862 3 3100 0.50 P7940 X02346 11207 Bovine papillomavirus type 1 -705 (+) ttgcagtgcgtgcattgaa 0.862 3 3100 0.50 P7940 X02346 11207 Bovine papillomavirus type 1 -591 (+) atgggacgcgtgcaaagca 0.855 3 3100 0.50 P7940 X02346 11207 Bovine papillomavirus type 1 -512 (-) aaaaaaagcgtgtcgcttt 0.764 3 3100 0.50 P89 X02346 11208 Bovine papillomavirus type 1 -802 (+) ttgcagtgcgtgcattgaa 0.862 3 3100 0.50 P89 X02346 11208 Bovine papillomavirus type 1 -688 (+) atgggacgcgtgcaaagca 0.855 3 3100 0.50 P89 X02346 11208 Bovine papillomavirus type 1 -609 (-) aaaaaaagcgtgtcgcttt 0.764 3 3100 0.50 P2443 (E2) X02346 11209 Bovine papillomavirus type 1 -2963 (-) aaaaaaagcgtgtcgcttt 0.764 2 3100 0.33 P2443 (E2) X02346 11209 Bovine papillomavirus type 1 -846 (-) acatttagcgtgtttgcca 0.796 2 3100 0.33 P3080 X02346 11210 Bovine papillomavirus type 1 -1479 (-) acatttagcgtgtttgcca 0.796 1 3100 0.17 [+.04] X01457 11211 (Murine) parvovirus H1 -189 (-) gtcacttgcgtgaacatgg 0.895 2 309 3.31 [+.04] X01457 11211 (Murine) parvovirus H1 -51 (+) gaagtgggcgtggctaact 0.820 2 309 3.31 [+.40] X01457 11212 (Murine) parvovirus H1 -1990 (-) gtcacttgcgtgaacatgg 0.895 2 2110 0.49 [+.40] X01457 11212 (Murine) parvovirus H1 -1852 (+) gaagtgggcgtggctaact 0.820 2 2110 0.49 late J02288 11214 Mouse polyoma virus -942 (-) gtgcacagcgtgtataatc 0.770 1 3100 0.17 3.6 kb X01587 11215 Human hepatitis B virus -2245 (-) aggcactgcgtgtagtttc 0.800 1 3100 0.17 3.6 kb X01587 11217 Human hepatitis B virus -2214 (-) aggcactgcgtgtagtttc 0.800 1 3100 0.17 2.2 kb X01587 11219 Human hepatitis B virus -402 (-) aggcactgcgtgtagtttc 0.800 1 3100 0.17 2.2 kb X01587 11221 Human hepatitis B virus -433 (-) aggcactgcgtgtagtttc 0.800 1 3100 0.17 beta-DNA polymerase X17403 15057 Human cytomegalovirus -2842 (+) ctcgatcgcgtgcctgcgc 0.860 6 3100 0.99 beta-DNA polymerase X17403 15057 Human cytomegalovirus -2538 (-) gtctcttgcgtgtcgcgcg 0.886 6 3100 0.99 beta-DNA polymerase X17403 15057 Human cytomegalovirus -2210 (+) ccctatcgcgtgtgttcta 0.821 6 3100 0.99 beta-DNA polymerase X17403 15057 Human cytomegalovirus -836 (+) gccagctgcgtgaccatca 0.898 6 3100 0.99 beta-DNA polymerase X17403 15057 Human cytomegalovirus -802 (+) aggtgctgcgtgatatgaa 0.889 6 3100 0.99 beta-DNA polymerase X17403 15057 Human cytomegalovirus -151 (-) agcggctgcgtgcacagac 0.903 6 3100 0.99 gamma-Phosphoprotein 65 X17403 15058 Human cytomegalovirus -2699 (-) agtccgtgcgtgggtacgt 0.863 13 3100 2.15 gamma-Phosphoprotein 65 X17403 15058 Human cytomegalovirus -2631 (+) gcgctatgcgtgctgccgc 0.879 13 3100 2.15 gamma-Phosphoprotein 65 X17403 15058 Human cytomegalovirus -2204 (-) cgcgcgggcgtgcgcggct 0.894 13 3100 2.15 gamma-Phosphoprotein 65 X17403 15058 Human cytomegalovirus -2000 (-) ggtcgacgcgtggcatgct 0.841 13 3100 2.15 gamma-Phosphoprotein 65 X17403 15058 Human cytomegalovirus -1445 (+) attctatgcgtggtctcta 0.800 13 3100 2.15 gamma-Phosphoprotein 65 X17403 15058 Human cytomegalovirus -1391 (-) agcctgggcgtgcgggaaa 0.831 13 3100 2.15 gamma-Phosphoprotein 65 X17403 15058 Human cytomegalovirus -1291 (-) aacagcggcgtgatgatac 0.800 13 3100 2.15 gamma-Phosphoprotein 65 X17403 15058 Human cytomegalovirus -1108 (-) accgtcagcgtgggcgtca 0.797 13 3100 2.15 gamma-Phosphoprotein 65 X17403 15058 Human cytomegalovirus -1086 (-) gcacagcgcgtgtcgtacg 0.807 13 3100 2.15 gamma-Phosphoprotein 65 X17403 15058 Human cytomegalovirus -1042 (+) cggggccgcgtggactcac 0.809 13 3100 2.15 gamma-Phosphoprotein 65 X17403 15058 Human cytomegalovirus -913 (-) tggtatagcgtgagtgacg 0.850 13 3100 2.15 gamma-Phosphoprotein 65 X17403 15058 Human cytomegalovirus -761 (-) cgccggagcgtggcggtac 0.802 13 3100 2.15 gamma-Phosphoprotein 65 X17403 15058 Human cytomegalovirus -442 (-) gagtgtagcgtggatttga 0.784 13 3100 2.15 gamma-Phosphoprotein 71 X17403 15059 Human cytomegalovirus -2957 (-) accgtcagcgtgggcgtca 0.797 15 3100 2.48 gamma-Phosphoprotein 71 X17403 15059 Human cytomegalovirus -2935 (-) gcacagcgcgtgtcgtacg 0.807 15 3100 2.48 gamma-Phosphoprotein 71 X17403 15059 Human cytomegalovirus -2891 (+) cggggccgcgtggactcac 0.809 15 3100 2.48 gamma-Phosphoprotein 71 X17403 15059 Human cytomegalovirus -2762 (-) tggtatagcgtgagtgacg 0.850 15 3100 2.48 gamma-Phosphoprotein 71 X17403 15059 Human cytomegalovirus -2610 (-) cgccggagcgtggcggtac 0.802 15 3100 2.48 gamma-Phosphoprotein 71 X17403 15059 Human cytomegalovirus -2291 (-) gagtgtagcgtggatttga 0.784 15 3100 2.48 gamma-Phosphoprotein 71 X17403 15059 Human cytomegalovirus -1676 (+) cacgtacgcgtgagccagc 0.860 15 3100 2.48 gamma-Phosphoprotein 71 X17403 15059 Human cytomegalovirus -1639 (-) gagtcgggcgtgtactgcg 0.822 15 3100 2.48 gamma-Phosphoprotein 71 X17403 15059 Human cytomegalovirus -1374 (-) gcccgacgcgtgaatcaca 0.823 15 3100 2.48 gamma-Phosphoprotein 71 X17403 15059 Human cytomegalovirus -1192 (-) gttgcgcgcgtgttctcca 0.785 15 3100 2.48 gamma-Phosphoprotein 71 X17403 15059 Human cytomegalovirus -1090 (-) gagcccagcgtgacgtgca 0.855 15 3100 2.48 gamma-Phosphoprotein 71 X17403 15059 Human cytomegalovirus -489 (+) ggcgacggcgtgcacgtcg 0.826 15 3100 2.48 gamma-Phosphoprotein 71 X17403 15059 Human cytomegalovirus -467 (-) ggcggccgcgtgtcataac 0.825 15 3100 2.48 gamma-Phosphoprotein 71 X17403 15059 Human cytomegalovirus -124 (-) cctaagcgcgtgcggcggg 0.873 15 3100 2.48 gamma-Phosphoprotein 71 X17403 15059 Human cytomegalovirus -81 (-) aaaagttgcgtgtctgagt 0.863 15 3100 2.48 E6 X05015 15060 Human Papillomavirus type 18 -2994 (+) ctgtgcggcgtgtagcagg 0.778 5 3100 0.83 E6 X05015 15060 Human Papillomavirus type 18 -2781 (+) catccaggcgtgggactgt 0.830 5 3100 0.83 E6 X05015 15060 Human Papillomavirus type 18 -1529 (+) gcttacggcgtgagcagct 0.876 5 3100 0.83 E6 X05015 15060 Human Papillomavirus type 18 -785 (+) ctgccaagcgtgtgcgtgt 0.805 5 3100 0.83 E6 X05015 15060 Human Papillomavirus type 18 -779 (+) agcgtgtgcgtgtacgtgc 0.830 5 3100 0.83 E6 X05015 15061 Human Papillomavirus type 18 -2856 (+) catccaggcgtgggactgt 0.830 4 3100 0.66 E6 X05015 15061 Human Papillomavirus type 18 -1604 (+) gcttacggcgtgagcagct 0.876 4 3100 0.66 E6 X05015 15061 Human Papillomavirus type 18 -860 (+) ctgccaagcgtgtgcgtgt 0.805 4 3100 0.66 E6 X05015 15061 Human Papillomavirus type 18 -854 (+) agcgtgtgcgtgtacgtgc 0.830 4 3100 0.66 Long terminal repeat K02730 16074 Xenotropic murine leukemia virus -2421 (+) catctctgcgtggatacac 0.864 3 2749 0.56 Long terminal repeat K02730 16074 Xenotropic murine leukemia virus -2412 (-) gtgagcggcgtgtatccac 0.774 3 2749 0.56 Long terminal repeat K02730 16074 Xenotropic murine leukemia virus -440 (+) tagaatcgcgtgaataaat 0.843 3 2749 0.56 Long terminal repeat J02196 16077 Gibbon ape leukemia virus -272 (-) gctttgggcgtgccttatg 0.836 1 413 1.24 Long terminal repeat K02120 16079 Bovine leukemia virus -2015 (-) tgggggtgcgtgaaacgcg 0.916 4 3100 0.66 Long terminal repeat K02120 16079 Bovine leukemia virus -1858 (+) cgcttctgcgtgtcgctca 0.847 4 3100 0.66 Long terminal repeat K02120 16079 Bovine leukemia virus -1617 (-) ggaagctgcgtggggaaga 0.854 4 3100 0.66 Long terminal repeat K02120 16079 Bovine leukemia virus -1017 (-) caggtgagcgtggtgtcga 0.787 4 3100 0.66 Long terminal repeat X05291 16081 Human immunodeficiency virus type 2 -2919 (-) tgtctgcgcgtgcgcatgg 0.846 2 3100 0.33 Long terminal repeat X05291 16081 Human immunodeficiency virus type 2 -880 (+) tgcgggcgcgtgcaggggc 0.836 2 3100 0.33 Long terminal repeat M19499 16082 Simian AIDS retrovirus SRV-1 -830 (+) tgcgggcgcgtggagagac 0.805 3 3100 0.50 Long terminal repeat M19499 16082 Simian AIDS retrovirus SRV-1 -744 (-) cacaagagcgtgagctcaa 0.851 3 3100 0.50 Long terminal repeat M19499 16082 Simian AIDS retrovirus SRV-1 -265 (+) ggttctagcgtggaagttt 0.822 3 3100 0.50 Long terminal repeat Y00277 16083 Simian immunodeficiency virus -839 (+) tgcgggcgcgtggggagaa 0.817 1 3100 0.17 Immediate early gene-I M11788 16084 Murine cytomegalovirus -70 (-) atagaatgcgtgccaatat 0.891 1 936 0.55 beta-gamma 2.7 kb X14112 16085 Human herpes simplex virus type 1 -2871 (-) agtctgcgcgtgtgtcccg 0.805 15 3100 2.48 beta-gamma 2.7 kb X14112 16085 Human herpes simplex virus type 1 -2431 (+) gttgccggcgtgtgtgtta 0.773 15 3100 2.48 beta-gamma 2.7 kb X14112 16085 Human herpes simplex virus type 1 -2015 (+) ggtacctgcgtgcggtgtt 0.907 15 3100 2.48 beta-gamma 2.7 kb X14112 16085 Human herpes simplex virus type 1 -1578 (+) gagggacgcgtgccgggcc 0.868 15 3100 2.48 beta-gamma 2.7 kb X14112 16085 Human herpes simplex virus type 1 -1428 (+) ttatcgcgcgtgggggtca 0.779 15 3100 2.48 beta-gamma 2.7 kb X14112 16085 Human herpes simplex virus type 1 -1210 (-) cgcctccgcgtgaaggcgc 0.837 15 3100 2.48 beta-gamma 2.7 kb X14112 16085 Human herpes simplex virus type 1 -984 (+) gactgtcgcgtggccgccc 0.842 15 3100 2.48 beta-gamma 2.7 kb X14112 16085 Human herpes simplex virus type 1 -867 (+) ctggggcgcgtgctggatg 0.822 15 3100 2.48 beta-gamma 2.7 kb X14112 16085 Human herpes simplex virus type 1 -571 (+) cgcccgggcgtgcggggac 0.879 15 3100 2.48 beta-gamma 2.7 kb X14112 16085 Human herpes simplex virus type 1 -530 (-) atggcgcgcgtggccgccg 0.810 15 3100 2.48 beta-gamma 2.7 kb X14112 16085 Human herpes simplex virus type 1 -463 (+) cgtggtggcgtgcgtgaca 0.872 15 3100 2.48 beta-gamma 2.7 kb X14112 16085 Human herpes simplex virus type 1 -459 (+) gtggcgtgcgtgacactgg 0.903 15 3100 2.48 beta-gamma 2.7 kb X14112 16085 Human herpes simplex virus type 1 -388 (+) gcgctacgcgtgcgtcctc 0.850 15 3100 2.48 beta-gamma 2.7 kb X14112 16085 Human herpes simplex virus type 1 -165 (+) cgggtccgcgtggtggaca 0.795 15 3100 2.48 beta-gamma 2.7 kb X14112 16085 Human herpes simplex virus type 1 -54 (-) cttatgggcgtggcgggcc 0.818 15 3100 2.48 gamma-Phosphoprotein 150 X17403 16086 Human cytomegalovirus -2783 (+) gtcgctagcgtgtcgcagc 0.810 19 3100 3.14 gamma-Phosphoprotein 150 X17403 16086 Human cytomegalovirus -2641 (-) cgcacacgcgtgccgcctc 0.850 19 3100 3.14 gamma-Phosphoprotein 150 X17403 16086 Human cytomegalovirus -2638 (+) gcggcacgcgtgtgcgggg 0.845 19 3100 3.14 gamma-Phosphoprotein 150 X17403 16086 Human cytomegalovirus -2218 (-) gcgctgggcgtggaagtgc 0.811 19 3100 3.14 gamma-Phosphoprotein 150 X17403 16086 Human cytomegalovirus -2089 (-) gtgtcgcgcgtgtgcgcgc 0.815 19 3100 3.14 gamma-Phosphoprotein 150 X17403 16086 Human cytomegalovirus -2054 (+) tcggccggcgtgggcggct 0.837 19 3100 3.14 gamma-Phosphoprotein 150 X17403 16086 Human cytomegalovirus -1775 (-) ccgagatgcgtgacaacgt 0.939 19 3100 3.14 gamma-Phosphoprotein 150 X17403 16086 Human cytomegalovirus -1472 (-) gccaatcgcgtggcgtagg 0.816 19 3100 3.14 gamma-Phosphoprotein 150 X17403 16086 Human cytomegalovirus -1221 (-) aaacgcagcgtgtctttca 0.771 19 3100 3.14 gamma-Phosphoprotein 150 X17403 16086 Human cytomegalovirus -1208 (+) gcgtttggcgtgctgattg 0.840 19 3100 3.14 gamma-Phosphoprotein 150 X17403 16086 Human cytomegalovirus -976 (-) cgctggcgcgtgtggtgcc 0.830 19 3100 3.14 gamma-Phosphoprotein 150 X17403 16086 Human cytomegalovirus -967 (+) cgcgccagcgtgccaatgg 0.879 19 3100 3.14 gamma-Phosphoprotein 150 X17403 16086 Human cytomegalovirus -843 (-) tttgttagcgtgctactca 0.831 19 3100 3.14 gamma-Phosphoprotein 150 X17403 16086 Human cytomegalovirus -656 (+) acaggtggcgtgcccatta 0.850 19 3100 3.14 gamma-Phosphoprotein 150 X17403 16086 Human cytomegalovirus -519 (+) atgattggcgtgcgtatgt 0.838 19 3100 3.14 gamma-Phosphoprotein 150 X17403 16086 Human cytomegalovirus -402 (-) ccggccggcgtggcctcgt 0.828 19 3100 3.14 gamma-Phosphoprotein 150 X17403 16086 Human cytomegalovirus -346 (+) acagtaagcgtgagaaaat 0.872 19 3100 3.14 gamma-Phosphoprotein 150 X17403 16086 Human cytomegalovirus -285 (-) acgaatcgcgtgcttggct 0.857 19 3100 3.14 gamma-Phosphoprotein 150 X17403 16086 Human cytomegalovirus -265 (+) agcagctgcgtgatcaaca 0.869 19 3100 3.14 R1 145K V01555 16087 Human herpesvirus 4 (Epstein-Barr virus) -2987 (+) caatggagcgtgacgaagg 0.856 14 3100 2.31 R1 145K V01555 16087 Human herpesvirus 4 (Epstein-Barr virus) -2920 (+) cagccaagcgtgaccaagg 0.870 14 3100 2.31 R1 145K V01555 16087 Human herpesvirus 4 (Epstein-Barr virus) -2812 (+) ggagggggcgtggccttcc 0.799 14 3100 2.31 R1 145K V01555 16087 Human herpesvirus 4 (Epstein-Barr virus) -2646 (+) cagccatgcgtgaccgtga 0.899 14 3100 2.31 R1 145K V01555 16087 Human herpesvirus 4 (Epstein-Barr virus) -2568 (-) tccaacggcgtgcaggctc 0.809 14 3100 2.31 R1 145K V01555 16087 Human herpesvirus 4 (Epstein-Barr virus) -2464 (+) caatggagcgtgacgaagg 0.856 14 3100 2.31 R1 145K V01555 16087 Human herpesvirus 4 (Epstein-Barr virus) -2397 (+) cagccaagcgtgaccaagg 0.870 14 3100 2.31 R1 145K V01555 16087 Human herpesvirus 4 (Epstein-Barr virus) -2274 (+) ggagggggcgtggccttcc 0.799 14 3100 2.31 R1 145K V01555 16087 Human herpesvirus 4 (Epstein-Barr virus) -2108 (+) cagccatgcgtgaccgtga 0.899 14 3100 2.31 R1 145K V01555 16087 Human herpesvirus 4 (Epstein-Barr virus) -2030 (-) tccaacggcgtgcaggctc 0.809 14 3100 2.31 R1 145K V01555 16087 Human herpesvirus 4 (Epstein-Barr virus) -1926 (+) caatggagcgtgacgaagg 0.856 14 3100 2.31 R1 145K V01555 16087 Human herpesvirus 4 (Epstein-Barr virus) -1859 (+) cagccaagcgtgaccaagg 0.870 14 3100 2.31 R1 145K V01555 16087 Human herpesvirus 4 (Epstein-Barr virus) -1446 (-) aaatggtgcgtgtgtactc 0.853 14 3100 2.31 R1 145K V01555 16087 Human herpesvirus 4 (Epstein-Barr virus) -285 (-) gacaaaagcgtgttagaca 0.796 14 3100 2.31 R1 20K V01555 16088 Human herpesvirus 4 (Epstein-Barr virus) -2786 (-) gggttaagcgtgcatcttc 0.807 5 3100 0.83 R1 20K V01555 16088 Human herpesvirus 4 (Epstein-Barr virus) -2303 (-) caagggggcgtgaattttc 0.813 5 3100 0.83 R1 20K V01555 16088 Human herpesvirus 4 (Epstein-Barr virus) -1367 (+) cagggcggcgtgtgggggc 0.830 5 3100 0.83 R1 20K V01555 16088 Human herpesvirus 4 (Epstein-Barr virus) -1351 (+) ggctgacgcgtgcccccac 0.852 5 3100 0.83 R1 20K V01555 16088 Human herpesvirus 4 (Epstein-Barr virus) -1285 (+) cccattggcgtggagcccc 0.825 5 3100 0.83 R1 V01555 16089 Human herpesvirus 4 (Epstein-Barr virus) -2243 (-) attttctgcgtgagatgaa 0.901 6 3100 0.99 R1 V01555 16089 Human herpesvirus 4 (Epstein-Barr virus) -2059 (-) gcgcatagcgtgaagtcgg 0.842 6 3100 0.99 R1 V01555 16089 Human herpesvirus 4 (Epstein-Barr virus) -1969 (+) gctgttggcgtgcattcac 0.853 6 3100 0.99 R1 V01555 16089 Human herpesvirus 4 (Epstein-Barr virus) -1678 (-) aatccgagcgtgctgtttg 0.797 6 3100 0.99 R1 V01555 16089 Human herpesvirus 4 (Epstein-Barr virus) -1553 (+) tccagcagcgtgttttggg 0.779 6 3100 0.99 R1 V01555 16089 Human herpesvirus 4 (Epstein-Barr virus) -67 (+) gggtccagcgtgaggtctt 0.838 6 3100 0.99 R2 V01555 16090 Human herpesvirus 4 (Epstein-Barr virus) -2577 (+) gggtccagcgtgaggtctt 0.838 5 3100 0.83 R2 V01555 16090 Human herpesvirus 4 (Epstein-Barr virus) -1847 (-) cccgagtgcgtgacgccag 0.908 5 3100 0.83 R2 V01555 16090 Human herpesvirus 4 (Epstein-Barr virus) -1656 (-) gagtctcgcgtgtccggtg 0.856 5 3100 0.83 R2 V01555 16090 Human herpesvirus 4 (Epstein-Barr virus) -842 (-) ctcgctggcgtgagactgg 0.877 5 3100 0.83 R2 V01555 16090 Human herpesvirus 4 (Epstein-Barr virus) -458 (-) tctggaggcgtgggatctg 0.811 5 3100 0.83 L2 V01555 16091 Human herpesvirus 4 (Epstein-Barr virus) -2684 (+) gagtctcgcgtgtccggtg 0.856 5 3100 0.83 L2 V01555 16091 Human herpesvirus 4 (Epstein-Barr virus) -2493 (+) cccgagtgcgtgacgccag 0.908 5 3100 0.83 L2 V01555 16091 Human herpesvirus 4 (Epstein-Barr virus) -1763 (-) gggtccagcgtgaggtctt 0.838 5 3100 0.83 L2 V01555 16091 Human herpesvirus 4 (Epstein-Barr virus) -277 (-) tccagcagcgtgttttggg 0.779 5 3100 0.83 L2 V01555 16091 Human herpesvirus 4 (Epstein-Barr virus) -152 (+) aatccgagcgtgctgtttg 0.797 5 3100 0.83 beta-thymidine kinase X01712 17103 Human herpes simplex virus type 2 -78 (-) tgcatctgcgtgttcgaat 0.833 2 325 3.15 beta-thymidine kinase X01712 17103 Human herpes simplex virus type 2 -19 (+) gtgacgcgcgtggcctcga 0.799 2 325 3.15 beta-Glycoprotein D X04798 17104 Human herpes simplex virus type 2 -2451 (+) aggcggcgcgtgcggaggg 0.863 13 3100 2.15 beta-Glycoprotein D X04798 17104 Human herpes simplex virus type 2 -2290 (-) aagcgacgcgtggtaggtc 0.809 13 3100 2.15 beta-Glycoprotein D X04798 17104 Human herpes simplex virus type 2 -1700 (-) gggggtcgcgtgggtagac 0.856 13 3100 2.15 beta-Glycoprotein D X04798 17104 Human herpes simplex virus type 2 -1524 (-) gttccgggcgtggcggtgg 0.783 13 3100 2.15 beta-Glycoprotein D X04798 17104 Human herpes simplex virus type 2 -1278 (-) ggcgggagcgtggggcgga 0.812 13 3100 2.15 beta-Glycoprotein D X04798 17104 Human herpes simplex virus type 2 -1239 (-) gggcgaggcgtgttggggg 0.792 13 3100 2.15 beta-Glycoprotein D X04798 17104 Human herpes simplex virus type 2 -1021 (+) cacccgagcgtgcgttacg 0.864 13 3100 2.15 beta-Glycoprotein D X04798 17104 Human herpes simplex virus type 2 -697 (+) ccggggggcgtgcctgttg 0.845 13 3100 2.15 beta-Glycoprotein D X04798 17104 Human herpes simplex virus type 2 -568 (-) tggggaggcgtgcggtcgc 0.825 13 3100 2.15 beta-Glycoprotein D X04798 17104 Human herpes simplex virus type 2 -558 (-) ggggggtgcgtggggaggc 0.883 13 3100 2.15 beta-Glycoprotein D X04798 17104 Human herpes simplex virus type 2 -476 (+) ggggatggcgtgtctactc 0.821 13 3100 2.15 beta-Glycoprotein D X04798 17104 Human herpes simplex virus type 2 -419 (-) ttggcccgcgtgggggcag 0.798 13 3100 2.15 beta-Glycoprotein D X04798 17104 Human herpes simplex virus type 2 -287 (-) gcacggggcgtgtggcgac 0.827 13 3100 2.15 beta-Glycoprotein E X14112 17105 Human herpes simplex virus type 1 -2578 (+) gtccggcgcgtgtaccaca 0.784 9 3100 1.49 beta-Glycoprotein E X14112 17105 Human herpes simplex virus type 1 -2482 (+) tgccgcagcgtgctcctaa 0.800 9 3100 1.49 beta-Glycoprotein E X14112 17105 Human herpes simplex virus type 1 -2225 (-) cgcgggggcgtgcatcagg 0.834 9 3100 1.49 beta-Glycoprotein E X14112 17105 Human herpes simplex virus type 1 -1896 (-) tctggctgcgtggcgttgg 0.829 9 3100 1.49 beta-Glycoprotein E X14112 17105 Human herpes simplex virus type 1 -1108 (+) ggtgaccgcgtgcccacgt 0.860 9 3100 1.49 beta-Glycoprotein E X14112 17105 Human herpes simplex virus type 1 -689 (-) gggaagggcgtggtcgatg 0.781 9 3100 1.49 beta-Glycoprotein E X14112 17105 Human herpes simplex virus type 1 -620 (-) gtcgctcgcgtggcattag 0.832 9 3100 1.49 beta-Glycoprotein E X14112 17105 Human herpes simplex virus type 1 -345 (-) ttggcgtgcgtgacgaccg 0.894 9 3100 1.49 beta-Glycoprotein E X14112 17105 Human herpes simplex virus type 1 -341 (-) ggcattggcgtgcgtgacg 0.869 9 3100 1.49 beta-A222Infected cell protein 18.5 X14112 17106 Human herpes simplex virus type 1 -2670 (+) catctccgcgtggccgctg 0.825 17 3100 2.81 beta-A222Infected cell protein 18.5 X14112 17106 Human herpes simplex virus type 1 -2185 (-) gcgtggcgcgtgtcgaagg 0.818 17 3100 2.81 beta-A222Infected cell protein 18.5 X14112 17106 Human herpes simplex virus type 1 -2178 (-) tacgcaggcgtggcgcgtg 0.802 17 3100 2.81 beta-A222Infected cell protein 18.5 X14112 17106 Human herpes simplex virus type 1 -1746 (-) ggacatggcgtggttggcc 0.815 17 3100 2.81 beta-A222Infected cell protein 18.5 X14112 17106 Human herpes simplex virus type 1 -1716 (+) cccgtacgcgtgcgggccg 0.872 17 3100 2.81 beta-A222Infected cell protein 18.5 X14112 17106 Human herpes simplex virus type 1 -1559 (+) cggcggcgcgtgatggaca 0.831 17 3100 2.81 beta-A222Infected cell protein 18.5 X14112 17106 Human herpes simplex virus type 1 -1415 (+) gttgcccgcgtgaccctgg 0.831 17 3100 2.81 beta-A222Infected cell protein 18.5 X14112 17106 Human herpes simplex virus type 1 -1373 (+) aagagccgcgtgttgttcg 0.761 17 3100 2.81 beta-A222Infected cell protein 18.5 X14112 17106 Human herpes simplex virus type 1 -1280 (+) gacaagcgcgtggacatcc 0.799 17 3100 2.81 beta-A222Infected cell protein 18.5 X14112 17106 Human herpes simplex virus type 1 -1233 (-) gatggccgcgtggaactgc 0.803 17 3100 2.81 beta-A222Infected cell protein 18.5 X14112 17106 Human herpes simplex virus type 1 -923 (+) ccccccagcgtgcaggctg 0.846 17 3100 2.81 beta-A222Infected cell protein 18.5 X14112 17106 Human herpes simplex virus type 1 -906 (+) tgcggccgcgtggtccgcg 0.800 17 3100 2.81 beta-A222Infected cell protein 18.5 X14112 17106 Human herpes simplex virus type 1 -828 (+) tccgggcgcgtggacgtcc 0.790 17 3100 2.81 beta-A222Infected cell protein 18.5 X14112 17106 Human herpes simplex virus type 1 -666 (+) caaaaacgcgtgcccgctc 0.855 17 3100 2.81 beta-A222Infected cell protein 18.5 X14112 17106 Human herpes simplex virus type 1 -500 (+) gccagtagcgtgttcgtgg 0.802 17 3100 2.81 beta-A222Infected cell protein 18.5 X14112 17106 Human herpes simplex virus type 1 -382 (+) tgaccgcgcgtgccctgga 0.854 17 3100 2.81 beta-A222Infected cell protein 18.5 X14112 17106 Human herpes simplex virus type 1 43 (-) cggcggcgcgtgcgtttct 0.851 17 3100 2.81 beta-Transcript-4 X14112 17107 Human herpes simplex virus type 1 -2727 (-) catgtccgcgtggtctgtt 0.812 10 3100 1.65 beta-Transcript-4 X14112 17107 Human herpes simplex virus type 1 -2547 (-) gtgttgtgcgtgtatgggc 0.846 10 3100 1.65 beta-Transcript-4 X14112 17107 Human herpes simplex virus type 1 -2410 (-) cagtacggcgtggtactgc 0.796 10 3100 1.65 beta-Transcript-4 X14112 17107 Human herpes simplex virus type 1 -2337 (-) gaccgtggcgtggaccccg 0.823 10 3100 1.65 beta-Transcript-4 X14112 17107 Human herpes simplex virus type 1 -2280 (-) cccagacgcgtgggtggga 0.825 10 3100 1.65 beta-Transcript-4 X14112 17107 Human herpes simplex virus type 1 -2127 (-) cgccgtggcgtgcttccga 0.841 10 3100 1.65 beta-Transcript-4 X14112 17107 Human herpes simplex virus type 1 -1753 (-) ccgccgtgcgtggccttac 0.874 10 3100 1.65 beta-Transcript-4 X14112 17107 Human herpes simplex virus type 1 -1388 (+) cgaggacgcgtgcctggac 0.871 10 3100 1.65 beta-Transcript-4 X14112 17107 Human herpes simplex virus type 1 -536 (+) tggcgccgcgtgcttcgtg 0.822 10 3100 1.65 beta-Transcript-4 X14112 17107 Human herpes simplex virus type 1 25 (+) gcgccatgcgtgccgttgt 0.888 10 3100 1.65 beta-Transcript-9 X14112 17108 Human herpes simplex virus type 1 -2764 (-) gggaagggcgtggtcgatg 0.781 13 3100 2.15 beta-Transcript-9 X14112 17108 Human herpes simplex virus type 1 -2695 (-) gtcgctcgcgtggcattag 0.832 13 3100 2.15 beta-Transcript-9 X14112 17108 Human herpes simplex virus type 1 -2420 (-) ttggcgtgcgtgacgaccg 0.894 13 3100 2.15 beta-Transcript-9 X14112 17108 Human herpes simplex virus type 1 -2416 (-) ggcattggcgtgcgtgacg 0.869 13 3100 2.15 beta-Transcript-9 X14112 17108 Human herpes simplex virus type 1 -1752 (+) ggatgcggcgtgcatgcgc 0.825 13 3100 2.15 beta-Transcript-9 X14112 17108 Human herpes simplex virus type 1 -1354 (+) cacatgtgcgtggggtgac 0.883 13 3100 2.15 beta-Transcript-9 X14112 17108 Human herpes simplex virus type 1 -1005 (+) ggggctggcgtggcaggcg 0.877 13 3100 2.15 beta-Transcript-9 X14112 17108 Human herpes simplex virus type 1 -909 (-) gccccaggcgtgaatatgg 0.825 13 3100 2.15 beta-Transcript-9 X14112 17108 Human herpes simplex virus type 1 -783 (-) tgggggcgcgtggggaggg 0.823 13 3100 2.15 beta-Transcript-9 X14112 17108 Human herpes simplex virus type 1 -696 (+) ggtgtgggcgtgtatgacc 0.793 13 3100 2.15 beta-Transcript-9 X14112 17108 Human herpes simplex virus type 1 -673 (+) ggcgcaggcgtgcctggcg 0.865 13 3100 2.15 beta-Transcript-9 X14112 17108 Human herpes simplex virus type 1 -617 (+) tacattcgcgtggccgaca 0.823 13 3100 2.15 beta-Transcript-9 X14112 17108 Human herpes simplex virus type 1 -65 (+) tgggattgcgtggtatgtg 0.871 13 3100 2.15 beta-gamma-Virion protein 5 (HSV-1/2: =major capsid protein) X14112 17109 Human herpes simplex virus type 1 -2849 (+) gcggcccgcgtgcggctgg 0.850 18 3100 2.97 beta-gamma-Virion protein 5 (HSV-1/2: =major capsid protein) X14112 17109 Human herpes simplex virus type 1 -2744 (+) gcggtgtgcgtggctgcgg 0.870 18 3100 2.97 beta-gamma-Virion protein 5 (HSV-1/2: =major capsid protein) X14112 17109 Human herpes simplex virus type 1 -2707 (-) ttcctgagcgtgctgtacg 0.798 18 3100 2.97 beta-gamma-Virion protein 5 (HSV-1/2: =major capsid protein) X14112 17109 Human herpes simplex virus type 1 -2280 (-) ggagcaggcgtggaaactg 0.821 18 3100 2.97 beta-gamma-Virion protein 5 (HSV-1/2: =major capsid protein) X14112 17109 Human herpes simplex virus type 1 -2162 (+) tcccttagcgtggggccgg 0.819 18 3100 2.97 beta-gamma-Virion protein 5 (HSV-1/2: =major capsid protein) X14112 17109 Human herpes simplex virus type 1 -2065 (-) attgaccgcgtgggccccg 0.795 18 3100 2.97 beta-gamma-Virion protein 5 (HSV-1/2: =major capsid protein) X14112 17109 Human herpes simplex virus type 1 -1909 (+) gtggctggcgtggggcggg 0.833 18 3100 2.97 beta-gamma-Virion protein 5 (HSV-1/2: =major capsid protein) X14112 17109 Human herpes simplex virus type 1 -1729 (-) gggctgcgcgtgcgggcgc 0.856 18 3100 2.97 beta-gamma-Virion protein 5 (HSV-1/2: =major capsid protein) X14112 17109 Human herpes simplex virus type 1 -1591 (-) ctggacagcgtgtgtcttc 0.779 18 3100 2.97 beta-gamma-Virion protein 5 (HSV-1/2: =major capsid protein) X14112 17109 Human herpes simplex virus type 1 -1501 (-) gacgaccgcgtggtcgcca 0.792 18 3100 2.97 beta-gamma-Virion protein 5 (HSV-1/2: =major capsid protein) X14112 17109 Human herpes simplex virus type 1 -1263 (+) gatgtgggcgtgggtatgg 0.805 18 3100 2.97 beta-gamma-Virion protein 5 (HSV-1/2: =major capsid protein) X14112 17109 Human herpes simplex virus type 1 -1200 (-) cgagtccgcgtgctttatt 0.825 18 3100 2.97 beta-gamma-Virion protein 5 (HSV-1/2: =major capsid protein) X14112 17109 Human herpes simplex virus type 1 -1181 (+) tcctcgtgcgtgccgcacg 0.898 18 3100 2.97 beta-gamma-Virion protein 5 (HSV-1/2: =major capsid protein) X14112 17109 Human herpes simplex virus type 1 -1173 (-) ccccaccgcgtgcggcacg 0.861 18 3100 2.97 beta-gamma-Virion protein 5 (HSV-1/2: =major capsid protein) X14112 17109 Human herpes simplex virus type 1 -1058 (+) accccgggcgtgttcccga 0.782 18 3100 2.97 beta-gamma-Virion protein 5 (HSV-1/2: =major capsid protein) X14112 17109 Human herpes simplex virus type 1 -940 (+) tcatcttgcgtgggcattg 0.879 18 3100 2.97 beta-gamma-Virion protein 5 (HSV-1/2: =major capsid protein) X14112 17109 Human herpes simplex virus type 1 -540 (+) tcaaagcgcgtgattctgt 0.797 18 3100 2.97 beta-gamma-Virion protein 5 (HSV-1/2: =major capsid protein) X14112 17109 Human herpes simplex virus type 1 -105 (-) tccaaaagcgtgccaggaa 0.864 18 3100 2.97 Adenovirus erly Ia region (transactivating element) X01027 17110 Simian adenovirus (7P) -323 (+) ttggtaggcgtggccgggc 0.800 3 540 2.84 Adenovirus erly Ia region (transactivating element) X01027 17110 Simian adenovirus (7P) -313 (+) tggccgggcgtgggaacgg 0.837 3 540 2.84 Adenovirus erly Ia region (transactivating element) X01027 17110 Simian adenovirus (7P) -80 (-) agcagtcgcgtggtggtgc 0.776 3 540 2.84 gamma-Glycoprotein H X14112 23002 Human herpes simplex virus type 1 -2977 (+) gccccgtgcgtgtttcggt 0.860 12 3100 1.98 gamma-Glycoprotein H X14112 23002 Human herpes simplex virus type 1 -2894 (-) cctgcaggcgtgcggccgg 0.862 12 3100 1.98 gamma-Glycoprotein H X14112 23002 Human herpes simplex virus type 1 -2106 (+) gcgtctggcgtgggaaaac 0.871 12 3100 1.98 gamma-Glycoprotein H X14112 23002 Human herpes simplex virus type 1 -1930 (-) ctcttctgcgtgcccgtgg 0.890 12 3100 1.98 gamma-Glycoprotein H X14112 23002 Human herpes simplex virus type 1 -1648 (-) gtcagccgcgtgacccggc 0.847 12 3100 1.98 gamma-Glycoprotein H X14112 23002 Human herpes simplex virus type 1 -1408 (-) tgcatctgcgtgttcgaat 0.833 12 3100 1.98 gamma-Glycoprotein H X14112 23002 Human herpes simplex virus type 1 -1351 (+) aggtgacgcgtgtggcctc 0.786 12 3100 1.98 gamma-Glycoprotein H X14112 23002 Human herpes simplex virus type 1 -1295 (+) gtcaacagcgtgccgcaga 0.811 12 3100 1.98 gamma-Glycoprotein H X14112 23002 Human herpes simplex virus type 1 -1275 (+) cttggtggcgtgaaactcc 0.857 12 3100 1.98 gamma-Glycoprotein H X14112 23002 Human herpes simplex virus type 1 -1204 (-) cgcagacgcgtgttgatgg 0.782 12 3100 1.98 gamma-Glycoprotein H X14112 23002 Human herpes simplex virus type 1 -1088 (-) cgcagtagcgtgggcattt 0.833 12 3100 1.98 gamma-Glycoprotein H X14112 23002 Human herpes simplex virus type 1 -1034 (-) agcagttgcgtggtggtgg 0.828 12 3100 1.98 beta 2.2kb X17403 24003 Human cytomegalovirus -2963 (-) ccgacccgcgtgtgccctg 0.835 6 3100 0.99 beta 2.2kb X17403 24003 Human cytomegalovirus -1785 (+) cgcgtttgcgtgtcgagat 0.913 6 3100 0.99 beta 2.2kb X17403 24003 Human cytomegalovirus -1590 (+) aagactcgcgtgatcgatg 0.843 6 3100 0.99 beta 2.2kb X17403 24003 Human cytomegalovirus -618 (+) cttttccgcgtgtcgggtg 0.812 6 3100 0.99 beta 2.2kb X17403 24003 Human cytomegalovirus -332 (-) taaaacagcgtgctatgaa 0.838 6 3100 0.99 beta 2.2kb X17403 24003 Human cytomegalovirus -228 (-) cctttccgcgtgccgttat 0.846 6 3100 0.99 beta 2.7 kb X17403 24021 Human cytomegalovirus -2950 (+) agaaacagcgtgggactgt 0.799 4 3100 0.66 beta 2.7 kb X17403 24021 Human cytomegalovirus -2918 (+) ctgactggcgtgcgacctg 0.891 4 3100 0.66 beta 2.7 kb X17403 24021 Human cytomegalovirus -2468 (-) ttgtcaagcgtgcggctct 0.817 4 3100 0.66 beta 2.7 kb X17403 24021 Human cytomegalovirus -1388 (+) acttatagcgtgcctagct 0.878 4 3100 0.66 Immediate early gene glycoprotein/UL37 X17403 24023 Human cytomegalovirus -2958 (+) ctttccagcgtggcgatcc 0.801 11 3100 1.82 Immediate early gene glycoprotein/UL37 X17403 24023 Human cytomegalovirus -2910 (+) gcaagtcgcgtggcggcgg 0.832 11 3100 1.82 Immediate early gene glycoprotein/UL37 X17403 24023 Human cytomegalovirus -2464 (+) gcgggccgcgtgcctggga 0.862 11 3100 1.82 Immediate early gene glycoprotein/UL37 X17403 24023 Human cytomegalovirus -2111 (-) tcctccagcgtgcgttcct 0.844 11 3100 1.82 Immediate early gene glycoprotein/UL37 X17403 24023 Human cytomegalovirus -1550 (-) atgtcgtgcgtgcacaaaa 0.878 11 3100 1.82 Immediate early gene glycoprotein/UL37 X17403 24023 Human cytomegalovirus -1467 (+) atgatcggcgtggtttgtt 0.760 11 3100 1.82 Immediate early gene glycoprotein/UL37 X17403 24023 Human cytomegalovirus -810 (-) tggcggcgcgtgttgttac 0.759 11 3100 1.82 Immediate early gene glycoprotein/UL37 X17403 24023 Human cytomegalovirus -225 (+) cctatccgcgtgagttggg 0.867 11 3100 1.82 Immediate early gene glycoprotein/UL37 X17403 24023 Human cytomegalovirus -125 (+) gtacatcgcgtgcgaagat 0.907 11 3100 1.82 Immediate early gene glycoprotein/UL37 X17403 24023 Human cytomegalovirus 2 (-) gaaacccgcgtgtgggtct 0.810 11 3100 1.82 Immediate early gene glycoprotein/UL37 X17403 24023 Human cytomegalovirus 61 (+) ttaggtagcgtgggcctgc 0.796 11 3100 1.82 Immediate early gene glycoprotein/US3 X17403 24024 Human cytomegalovirus -2957 (+) aaggacggcgtgttggacg 0.771 8 3100 1.32 Immediate early gene glycoprotein/US3 X17403 24024 Human cytomegalovirus -2938 (+) ctgtgtggcgtgtacaggg 0.835 8 3100 1.32 Immediate early gene glycoprotein/US3 X17403 24024 Human cytomegalovirus -2850 (-) ctccggggcgtgcagacgg 0.834 8 3100 1.32 Immediate early gene glycoprotein/US3 X17403 24024 Human cytomegalovirus -2535 (-) tacacaggcgtgccaccgc 0.857 8 3100 1.32 Immediate early gene glycoprotein/US3 X17403 24024 Human cytomegalovirus -1592 (+) gttataagcgtggatggtc 0.780 8 3100 1.32 Immediate early gene glycoprotein/US3 X17403 24024 Human cytomegalovirus -1519 (-) ctgctttgcgtgatgatga 0.879 8 3100 1.32 Immediate early gene glycoprotein/US3 X17403 24024 Human cytomegalovirus -1124 (+) ggtcttcgcgtgacccgaa 0.882 8 3100 1.32 Immediate early gene glycoprotein/US3 X17403 24024 Human cytomegalovirus -8 (-) agaagtagcgtgtggactg 0.816 8 3100 1.32 1.65 kb/UL36 X17403 24041 Human cytomegalovirus -2879 (-) gaaacccgcgtgtgggtct 0.810 9 3100 1.49 1.65 kb/UL36 X17403 24041 Human cytomegalovirus -2820 (+) ttaggtagcgtgggcctgc 0.796 9 3100 1.49 1.65 kb/UL36 X17403 24041 Human cytomegalovirus -2257 (-) gtgctatgcgtggtcgtag 0.824 9 3100 1.49 1.65 kb/UL36 X17403 24041 Human cytomegalovirus -1939 (-) agctgacgcgtgggccgca 0.812 9 3100 1.49 1.65 kb/UL36 X17403 24041 Human cytomegalovirus -1770 (-) agtgtgcgcgtgctgacgg 0.827 9 3100 1.49 1.65 kb/UL36 X17403 24041 Human cytomegalovirus -1515 (-) cgccggggcgtgagaaggc 0.897 9 3100 1.49 1.65 kb/UL36 X17403 24041 Human cytomegalovirus -857 (-) tgtgattgcgtgtgcagtt 0.890 9 3100 1.49 1.65 kb/UL36 X17403 24041 Human cytomegalovirus -847 (-) tagatttgcgtgtgattgc 0.878 9 3100 1.49 1.65 kb/UL36 X17403 24041 Human cytomegalovirus -706 (+) ttcccctgcgtgtcttgaa 0.840 9 3100 1.49 3.3 kb X12798 26009 Duck hepatitis B virus -1450 (-) aagcttcgcgtgctttttg 0.817 3 3100 0.50 3.3 kb X12798 26009 Duck hepatitis B virus -780 (-) gcagacagcgtggctaatt 0.804 3 3100 0.50 3.3 kb X12798 26009 Duck hepatitis B virus -724 (-) ggagatggcgtggttttgt 0.778 3 3100 0.50 1.8 kb X12798 26010 Duck hepatitis B virus -2926 (-) aagcttcgcgtgctttttg 0.817 3 3100 0.50 1.8 kb X12798 26010 Duck hepatitis B virus -2256 (-) gcagacagcgtggctaatt 0.804 3 3100 0.50 1.8 kb X12798 26010 Duck hepatitis B virus -2200 (-) ggagatggcgtggttttgt 0.778 3 3100 0.50 Epstein-Barr virus nuclear antigens mRNAs V01555 26011 Human herpesvirus 4 (Epstein-Barr virus) -2958 (+) cccattggcgtggagcccc 0.825 2 3100 0.33 Epstein-Barr virus nuclear antigens mRNAs V01555 26011 Human herpesvirus 4 (Epstein-Barr virus) -387 (-) tcccacggcgtgtttacac 0.777 2 3100 0.33 Epstein-Barr virus nuclear antigens mRNAs V01555 26012 Human herpesvirus 4 (Epstein-Barr virus) -2214 (-) ccggggtgcgtggccaaga 0.883 3 3100 0.50 Epstein-Barr virus nuclear antigens mRNAs V01555 26012 Human herpesvirus 4 (Epstein-Barr virus) -843 (-) tggacgggcgtgggaggct 0.848 3 3100 0.50 Epstein-Barr virus nuclear antigens mRNAs V01555 26012 Human herpesvirus 4 (Epstein-Barr virus) -307 (-) tatgcgcgcgtggggacaa 0.813 3 3100 0.50 Ori_s ORF X14112 26013 Human herpes simplex virus type 1 -2707 (+) ccgccgtgcgtggccttac 0.874 11 3100 1.82 Ori_s ORF X14112 26013 Human herpes simplex virus type 1 -2333 (+) cgccgtggcgtgcttccga 0.841 11 3100 1.82 Ori_s ORF X14112 26013 Human herpes simplex virus type 1 -2180 (+) cccagacgcgtgggtggga 0.825 11 3100 1.82 Ori_s ORF X14112 26013 Human herpes simplex virus type 1 -2123 (+) gaccgtggcgtggaccccg 0.823 11 3100 1.82 Ori_s ORF X14112 26013 Human herpes simplex virus type 1 -2050 (+) cagtacggcgtggtactgc 0.796 11 3100 1.82 Ori_s ORF X14112 26013 Human herpes simplex virus type 1 -1913 (+) gtgttgtgcgtgtatgggc 0.846 11 3100 1.82 Ori_s ORF X14112 26013 Human herpes simplex virus type 1 -1733 (+) catgtccgcgtggtctgtt 0.812 11 3100 1.82 Ori_s ORF X14112 26013 Human herpes simplex virus type 1 -1321 (+) gacgcgagcgtgtggtccg 0.818 11 3100 1.82 Ori_s ORF X14112 26013 Human herpes simplex virus type 1 -445 (+) cgcttgcgcgtgcccaggg 0.890 11 3100 1.82 Ori_s ORF X14112 26013 Human herpes simplex virus type 1 -303 (-) gaccgttgcgtggaccgct 0.892 11 3100 1.82 Ori_s ORF X14112 26013 Human herpes simplex virus type 1 12 (+) cgcgtccgcgtgtcccttt 0.807 11 3100 1.82 L1 1 kb V01555 26014 Human herpesvirus 4 (Epstein-Barr virus) -2810 (-) tgggagagcgtggccgcaa 0.798 9 3100 1.49 L1 1 kb V01555 26014 Human herpesvirus 4 (Epstein-Barr virus) -2541 (+) aggttgtgcgtggccgtca 0.844 9 3100 1.49 L1 1 kb V01555 26014 Human herpesvirus 4 (Epstein-Barr virus) -2295 (-) atgaacagcgtgacatcgc 0.828 9 3100 1.49 L1 1 kb V01555 26014 Human herpesvirus 4 (Epstein-Barr virus) -1784 (-) atgttgagcgtggccatta 0.775 9 3100 1.49 L1 1 kb V01555 26014 Human herpesvirus 4 (Epstein-Barr virus) -1693 (+) ttccatcgcgtgccctata 0.827 9 3100 1.49 L1 1 kb V01555 26014 Human herpesvirus 4 (Epstein-Barr virus) -1521 (+) gtgctgggcgtggaccgcg 0.808 9 3100 1.49 L1 1 kb V01555 26014 Human herpesvirus 4 (Epstein-Barr virus) -1282 (-) ctgtccggcgtggctggag 0.822 9 3100 1.49 L1 1 kb V01555 26014 Human herpesvirus 4 (Epstein-Barr virus) -1254 (+) gtgagcggcgtgcttcccg 0.813 9 3100 1.49 L1 1 kb V01555 26014 Human herpesvirus 4 (Epstein-Barr virus) -1243 (+) gcttcccgcgtgcctgctg 0.853 9 3100 1.49 E6/E7 K02718 26033 Human Papillomavirus type 16 -2286 (-) tgtttgtgcgtgcaacata 0.883 3 3100 0.50 E6/E7 K02718 26033 Human Papillomavirus type 16 -1362 (-) ttgtactgcgtgtagtatc 0.797 3 3100 0.50 E6/E7 K02718 26033 Human Papillomavirus type 16 -459 (+) ttgccatgcgtgccaaatc 0.902 3 3100 0.50 Major late promoter M14785 26036 Human adenovirus type 12 -641 (+) ctgaagcgcgtgtcttctc 0.789 3 1072 1.43 Major late promoter M14785 26036 Human adenovirus type 12 -573 (+) ctctgtagcgtggccttta 0.796 3 1072 1.43 Major late promoter M14785 26036 Human adenovirus type 12 41 (-) tttgagcgcgtgtactcac 0.772 3 1072 1.43 beta-Glycoprotein B 3.3 kb X14112 27001 Human herpes simplex virus type 1 -2946 (+) caaaaacgcgtgcccgctc 0.855 11 3100 1.82 beta-Glycoprotein B 3.3 kb X14112 27001 Human herpes simplex virus type 1 -2780 (+) gccagtagcgtgttcgtgg 0.802 11 3100 1.82 beta-Glycoprotein B 3.3 kb X14112 27001 Human herpes simplex virus type 1 -2662 (+) tgaccgcgcgtgccctgga 0.854 11 3100 1.82 beta-Glycoprotein B 3.3 kb X14112 27001 Human herpes simplex virus type 1 -2237 (-) cggcggcgcgtgcgtttct 0.851 11 3100 1.82 beta-Glycoprotein B 3.3 kb X14112 27001 Human herpes simplex virus type 1 -1827 (+) agagtacgcgtggcgcgag 0.810 11 3100 1.82 beta-Glycoprotein B 3.3 kb X14112 27001 Human herpes simplex virus type 1 -1353 (-) cccggcggcgtggggcagg 0.813 11 3100 1.82 beta-Glycoprotein B 3.3 kb X14112 27001 Human herpes simplex virus type 1 -1183 (-) aggccgggcgtggtggcct 0.785 11 3100 1.82 beta-Glycoprotein B 3.3 kb X14112 27001 Human herpes simplex virus type 1 -894 (+) catccgcgcgtgctacgac 0.887 11 3100 1.82 beta-Glycoprotein B 3.3 kb X14112 27001 Human herpes simplex virus type 1 -812 (+) ctgcgtcgcgtgctggcgc 0.844 11 3100 1.82 beta-Glycoprotein B 3.3 kb X14112 27001 Human herpes simplex virus type 1 -619 (-) gccgcttgcgtggcgatgt 0.883 11 3100 1.82 beta-Glycoprotein B 3.3 kb X14112 27001 Human herpes simplex virus type 1 -365 (+) gcgccgggcgtgttcgacg 0.810 11 3100 1.82 Adenovirus early Ia region V00004 30061 Human adenovirus type 12 -219 (+) ggctttggcgtgcttgtaa 0.825 2 406 2.52 Adenovirus early Ia region V00004 30061 Human adenovirus type 12 -179 (+) gggcgcggcgtgggagccg 0.839 2 406 2.52 avg 1.84 sd 0.88