Dan Jones
A. Daniel Jones
Professor and Director, Mass Spectrometry Facility
  • B.S. 1976, Harvey Mudd College
  • Ph.D., Pennsylvania State Univ

jonesar4@msu.edu
209A Biochemistry Building
Michigan State University
East Lansing, MI 48824-1319
Office: 517-432-7126
Lab: 517-432-7202

Mass Spectrometry

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A. Daniel Jones

Research Interests

My research interests lie in improving mass spectrometry and separation strategies and applying them to perform global profiling of metabolites. This approach, known as metabolomics, probes the influence of genetics and environment on rates of biosynthesis and degradation of metabolites. Such measurements lie at the heart of systems biology approaches for engineering plants and microorganisms for improved productivity, as biosensors, and as valuable sources of an assortment of bioactive chemicals. Furthermore, the information in the metabolome can be used as biomarkers of stress, toxicity, and disease.

The diversity of metabolites produced by plants, fungi, and bacteria has been minimally explored, yet many of these compounds have potent biological activities that influence interactions involving plants, microbes, and insects. In several interdisciplinary collaborations, my research group has developed sensitive analytical schemes for characterizing, quantifying, and sorting these unknown metabolites according to chemical classes based on information contained in their mass spectra.

Our ongoing efforts are exploring the boundaries of fast-scanning high-resolution time-of-flight mass spectrometry and other MS/MS approaches to improve characterization of the metabolome using an assortment of plant and animal model systems. Plants appear to distinguish different modes of wounding (e.g. mechanical wounding from insect herbivory and pathogen infections), and their chemistry changes in distinct ways as a response to different environmental stresses. Precursor ion MS/MS scans have shown that different insect species deposit different phospholipids profiles onto plants while feeding, and these lipids may play important signaling roles that allow plants to distinguish stresses and respond with different defensive chemicals.

More targeted analyses of electrophilic signaling lipids are achieved through chemical derivatization that can be used for selective metabolite enrichment. Our group is also developing chiral monolithic capillary columns for sensitive HPLC and capillary electrochromatographic separations of metabolite enantiomers that will allow for improved metabolite localization and analysis of less abundant metabolites.


Recent Publications

Chung HS, Koo AJ, Gao X, Jayanty S, Thines B, Jones AD, Howe GA. Regulation and function of Arabidopsis JAZ genes in response to wounding and herbivory. Plant Physiol. 2008 Jan 25; [Epub ahead of print]

Balan V, da Costa Sousa L, Chundawat SP, Vismeh R, Jones AD, Dale BE. Mushroom spent straw: a potential substrate for an ethanol-based biorefinery. J Ind Microbiol Biotechnol. 2008 Jan 8; [Epub ahead of print]

Martin AN, Farquar GR, Jones AD, Frank M. (2007) The non-destructive identification of solid over-the-counter medications using single particle aerosol mass spectrometry, Rapid Commun. Mass Spectrom., 21: 3561-3568.

Denkenberger KA, Bowers RA, Jones AD, Mueller KT. (2007) NMR studies of the thermal degradation of a perfluoropolyether on the surfaces of gamma-alumina and kaolinite. Langmuir 23(17): 8855-8860.

Lu B, Xu C, Awai K, Jones AD, Benning C. (2007) A small ATPase protein of Arabidopsis, TGD3, involved in chloroplast lipid import. J Biol Chem. Oct 15; [Epub ahead of print]

Gu L, Jones AD, Last RL. (2007) LC-MS/MS Assay for Protein Amino Acids and Metabolically Related Compounds for Large-Scale Screening of Metabolic Phenotypes. Anal Chem. Oct 5; [Epub ahead of print]

Kuldau, G., Mansfield, M., Archibald, D., and A. D. Jones (2007). Relationship of sphinganine analog mycotoxin contamination in maize silage to seasonal weather conditions, and agronomic and ensiling practices. Phytopathology, 94: 505-511.

Last, R. L., Jones, A. D., and Y. Shachar-Hill (2007). Towards the plant metabolome and beyond. Nature Reviews Molecular Cell Biology, 8: 167-174.

Ishmael, S. S., Ishmael, F. T., Jones, A. D., and J. S. Bond (2006). Protease domain glycans affect oligomerization, disulfide bond formation, and stability of the meprin A metalloprotease homo-oligomer. J. Biol. Chem., 281: 37404-37415.

Wang, Y., Scherperel, G., Roberts, K. D., Jones, A. D., Reid, G. E., and H. Yan (2006). A point mutation converts dihydroneopterin aldolase to a cofactor-independent oxygenase. J. Am. Chem. Soc., 128: 13216-13223.

Chen, H., Jones, A. D., and G. A. Howe (2006). Constitutive activation of the jasmonate signaling pathway enhances the production of secondary metabolites in tomato. FEBS Letters, 580: 2540-2546. MORE