PSA Distributed Software

<BODY BACKGROUND="graphics/chalk.jpg"> <BR> <CENTER> <H1>Software Distributed by the Protein Structural Analysis and Design Lab</H1> </CENTER> <IMG SRC="graphics/rd_tri.gif" ALT="#"> StoneHinge -- Protein hinge prediction by determining the consensus of ProFlex and DomDecomp identification of domains and intervening hinges. <UL> <LI><A href="http://stonehinge.molmovdb.org">Use the StoneHinge server or download the software</a> </UL> <IMG SRC="graphics/rd_tri.gif" ALT="#"> SLIDE -- Computational screening and docking tool designed to find ligands with good steric and chemical complementarity to the known three-dimensional structure of a protein's binding site. <UL> <LI><A href="projects/screening.html">Usage and Licensing Information</a> </UL> <IMG SRC="graphics/rd_tri.gif" ALT="#"> Consolv -- Software to predict whether water molecules bound to the surface of a protein are likely to be conserved or displaced in other, independently-solve crystallographic structures of the same protein. <UL> <LI><A href="consolv/doc.html">Download, Installation, and Usage Information</a> </UL> <IMG SRC="graphics/rd_tri.gif" ALT="#"> Superpositional Structure Assignment (SSA) -- Software to automate the assignment of the secondary structure of a peptide from its atomic coordinates in PDB format based on their superposition with sequences of ideal secondary structure. <UL> <LI><A href="software/ssa/installation.html">Download and Installation Information</a> <LI><A href="software/ssa/use.html">Usage Information</a> </ul> <IMG SRC="graphics/rd_tri.gif" ALT="#"> Sequery -- Software to search the sequences of the protein structures in the Protein Data Bank (PDB) for a particular pattern of residues, including exact matches, matrix calculated substitutions, and user-defined substitutions.<P> <UL> <LI><A href="software/sequery/installation.html">Download and Installation Information</a> <LI><A href="software/sequery/use.html">Usage Information</a> </ul> <IMG SRC="graphics/rd_tri.gif" ALT="#"> WatCH -- Software to calculate and analyze conserved water molecule binding sites among a series of crystallographic structures of the same protein using heirarchical cluster analysis.<P> <UL> <LI><A href="software/WaterCluster/doc.html">Download, Installation, and Usage Information</a> </ul> </BODY>